Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01427 ATGGCAGGACTTGCACCCGAGGGATCACAGTTTGATACTCGTCAATATGATAGCAAGATGAATGAGTTGCTTACATCTGATGTACAGGACTTCTTCACATCTTATGATGAGGTTTATGACAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTTAGAGGCATTTATGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAAGGACTTGATGTTATACAACAAGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGAATTCTGCAGCAACTTGACTATAGTTTGACAGATTGCCAAGCTTTGGTTTTAGCACCAACTCGGGAGCTTGCTCAGCAGATTGAAAAGGTTATGAGGGCACTTGGAGATTACCTTGGTGTGAAGGTGCATGCATGTGTGGGAGGTACCAGTGTTCGTGAAGACCAACGCATTCTATCAAGTGGTGTCCATGTTGTTGTTGGTACTCCTGGTCGAGTATTTGATATGCTGCGCAGGCAGTCACTTCGGCCGGATCACATTAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTTCCAACTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTTATGAACaaacctgtgagaatccttgtgaagcgtgatgagctcaccttggagggtatcaagcagttttatgtcaatgttgataaagaggactggaagcttgacacactctgtgatctttatgagacattggctattactcagagtgtcatttttgtgaacaccagaagaaaggTTGATTGGCTGACTGACAAGATGCGAAGCCGAGATCACACAGTCTCAGCAACCCATGGAGACATGGATCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCCTCCCGTGTTTTAATAACTACTGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCTTTGGTTATAAATTACGATCTTCCAACACAGCCTGAGAACTATCTCCATCGTATTGGACGTAGTGGGAGGTTTGGTAGGAAAGGTGTTGCTATCAACTTTGTCACAAAGGATGATGAAAAAATGCTGTATGACATCCAGAAGTTTTACAACGTGGTAATTGAGGAGCTGCCTTCAAATGTTGCTGAACTCCTTTGA 1242 0.3776 MAGLAPEGSQFDTRQYDSKMNELLTSDVQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPTKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLYDIQKFYNVVIEELPSNVAELL 413
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01427 413 PANTHER RNA HELICASE 23 413 - -
Cca08g01427 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 394 IPR027417 -
Cca08g01427 413 Gene3D - 30 247 IPR027417 -
Cca08g01427 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Cca08g01427 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cca08g01427 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cca08g01427 413 CDD SF2_C_DEAD 253 383 - -
Cca08g01427 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Cca08g01427 413 CDD DEADc_EIF4A 44 242 - -
Cca08g01427 413 SMART ultradead3 59 256 IPR014001 -
Cca08g01427 413 Gene3D - 248 413 IPR027417 -
Cca08g01427 413 SMART helicmild6 293 374 IPR001650 -
Cca08g01427 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cca08g01427 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cca08g01427 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca08g01427 Cca-Chr8 42526210 42530008 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01427 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 764
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01427 K03257 - gmx:100788218 800.045
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01427 08 42526210 42530008 Cca08g01427 08 42526210 42530008 ECH
Cca11g02493 11 52103853 52106908 Cca08g01427 08 42526210 42530008 PCT