Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01423 ATGGAGAATCGCAaggtggaggaggatgtgcatgttagggaggacgatgatgacgtggcggtggaggaagaggaggaTCAAGGTGTCGTCGGCTCCAGCTTGACCTTGGAGAGGGTCGCTGTGGCCAAGAAATTCATTGAGAATCATTACAGGGCTCAGATGAAGCTCATCAATGAACGCAAGGAGAGGCGATTAGTGCTACAAAAGAAGTTAGAGTCTTCTCAAGTACCAGAAGAGGAACAGCTCAATCTATTGAAGGATTTAGAGCGCAAGGAAACTGAGTATATACGGTTAAAAAGAAATAAAATATGTGTAGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGGGAGGTAAGACTCTGCCGTGAAAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAGAAGTCTGAAATGCTCAGCAGGGGACAGGTAGAGCATGTCAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAGTGACTGCATTGTGAAACTCTATTACTCATTTCAAGATGCTGACCACTTATATCTCATAATGGAATATTTGCCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTATATTGCCCAAAGTGTTTTGGCCATAGAGTCTATTCATAAACACAACTACATTCATCGAGATATAAAACCTGACAACCTTCTATTGGACAAATATGGTCACATGAAACTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCAAGTCTATCATCTATAAATGAAAATGAAATCCTGGATGATGTGAACTTGAATGATACCATGGATGTTGATGGAGCCTTGCCAAATGGCCGAAATGGTAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATTAACAGGAGGAAGTTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCTCCTGAAGTATTACTGAAAAAGGGTTATAGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTATGAAATGCTAGTTGGATATCCTCCATTTTACTCTGATGATCCCGTATCAACATGCAGAAAGATTGTGCACTGGAAAAATCACTTGAAATTTCCAGAGGAGGCCAGATTGACACCTGAAGCCAAGGATCTAGTATGCAGGTTGCTTTCTGGTGTTCCACACAGGCTTGGTACTAGAGGAGCAGATGAAATCAAAGCTCATCCTTGGTTCAAAGATGTTATATGGGACAAACTCTATGAAATGGATGCAGCATTTAAACCACAAGTCAATGGAGAGCTTGACACTCAGAATTTTATGAAATTTGATGAGGTTGACCAACCAAAACCAACTAGAACTGGATCTGGAACCCACAGAAAGAAGCTCATAACTACTCAAGATCTCAGTTTTGTTGGTTATACATATAAGAATTTTGCTGCTGTCAAGGGGATGTATCAATCTACCGAAGCAGGGGGCATGTCACCAAAGCGAACATCCGTTGACTCCACGCAAAGTGACTCTGCAATAGACTATTCCACCTGA 1554 0.3951 MENRKVEEDVHVREDDDDVAVEEEEDQGVVGSSLTLERVAVAKKFIENHYRAQMKLINERKERRLVLQKKLESSQVPEEEQLNLLKDLERKETEYIRLKRNKICVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVASDCIVKLYYSFQDADHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKYGHMKLSDFGLCKPLDCSSLSSINENEILDDVNLNDTMDVDGALPNGRNGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYSVECDWWSLGAIMYEMLVGYPPFYSDDPVSTCRKIVHWKNHLKFPEEARLTPEAKDLVCRLLSGVPHRLGTRGADEIKAHPWFKDVIWDKLYEMDAAFKPQVNGELDTQNFMKFDEVDQPKPTRTGSGTHRKKLITTQDLSFVGYTYKNFAAVKGMYQSTEAGGMSPKRTSVDSTQSDSAIDYST 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01423 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 516 - -
Cca08g01423 517 Gene3D Phosphorylase Kinase; domain 1 66 191 - -
Cca08g01423 517 ProSiteProfiles Protein kinase domain profile. 108 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01423 517 MobiDBLite consensus disorder prediction 493 517 - -
Cca08g01423 517 CDD STKc_NDR_like 106 480 - -
Cca08g01423 517 Gene3D Phosphorylase Kinase; domain 1 434 444 - -
Cca08g01423 517 SUPERFAMILY Protein kinase-like (PK-like) 91 458 IPR011009 -
Cca08g01423 517 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Cca08g01423 517 Gene3D Transferase(Phosphotransferase) domain 1 192 258 - -
Cca08g01423 517 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g01423 517 Pfam Protein kinase domain 110 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01423 517 Pfam Protein kinase domain 308 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01423 517 MobiDBLite consensus disorder prediction 495 517 - -
Cca08g01423 517 SMART serkin_6 108 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01423 517 Gene3D Transferase(Phosphotransferase) domain 1 314 433 - -
Cca08g01423 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cca08g01423 517 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 20 516 - -
Cca08g01423 517 SMART pkinase_C_6 416 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca08g01423 517 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01423 Cca-Chr8 42457410 42475094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01423 25 516 AGC Kinase Gene Family AT2G19400 77.172 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Cca08g01423 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01423 K08790 - gmx:100802177 900.582