Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01418 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATACACCCTTGGGAATTTAAAACAGAAAGAGTCAGGAGTGACCACCCACATGGAGATAACTGGTCTAAAGCTCAGGGCCAATACAGCATCAGCTTTGAAATTCAACCCTGCAATTGAGGGTTCTCAGTCCAACTCTGTTGGAAGTGAAAACTACTCAGATATTGGTCCACAACCCCAAATTAAAGTGTCTTCAGAAGGCAAAGGTGATCAGGTTGGAGGCCACGTTGTGTCAAAAATGGTTAGTCAAGGAGACAGTAATTGTTTCCATTCTGAAAGTCAAAACAAGGCAAGAAATGAAAATGAATCATTGTTAGCTAAGGATTCTCAGTGTGTGGATATCTTTCAATCTTCTGCTGGTGACAAAAACAGTCCTTGTAGGGAGGAATCTTCTGTTTTGAATACTAATTGTTGTGAAGATAATATAAGTCATGGAAAGTCCAGTTTGATCGCGCTAGTGCCGGTACAGAACATGGTTCCTGCTGCTATGGAACATGAGAATGAAGATGGAAGTGGATCAGATGAGTCTGATAAAAAACCATTTGTTGTGCCTTGTGAGATGCCAGAAAAGCAAACATGCTTGGAATTGAGTGGTACTACTAGTACTACCCCACTTTGGGGCTGCTCATCAGTTTGTGGAAGGAGAGAAGAGATGGAAGATGCTATTGCAGTTAGGCCTCACCTTTTTCAAGTCAGCTCAAGGATGGTAATGGATGATAATGTGAATGAGAACATAAAATACTCACCAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGTTGTCAGGTTGCCAATTACTGCCGGGAGCATCTTCATTCAGTGTTGGTTGATGAGGTAGAAGCTGCACAATCAAGTTTCTATGGAGAGAATGGGAGGGACAACTGGGAGGACCAATGGAAGAAAACATTCTCCAATTGTTTTCAAAAAGTTGATGATGAGGTTGGAGGAGTTGAAGGTGATGGTGCAAGTGTTGAATCTCTTGCTTCTGAGACTGTTGGCTCCACTGCTGTGGTTGCCATTTTAACTCAAACACACATAATAGTTGCAAACTGTGGAGATTCAAGAGCTGTCTTAGGCCGTGGTAAAGAAGCATTTCCATTGTCTGTTGACCACAAACCAAATAGAGATGATGAATGGGAAAGGATTGAAGCTGCAGGAGGAAGGGTCATACAATGGAATGGGTACCGAGTTCTAGGTGTTTTAGCTGTGTCAAGGTCCATAGGTGATAGGTACTTGAAACCATGGATAATTCCAGACCCAGAAGTGAAGTGTGTCCAACGAGACAAAAATGACGAGTGCCTCATTCTAGCCAGTGATGGCTTATGGGATGTCATGACAAATGAAGAAGCCTGTGACATTGCACGAAAGCGAATCCTTCTTTGGCATAAGAAAAATGGCAATAACAACATATCATCAGAACAAGCCCAAGAAGTTGATCCTGCAGCTCAGTATGCTGCAGAGTATTTATCAAGACTTGCCCTCCAAAGGGGAACCAAAGATAACATCTCTGTCATTGTTATAGACTTGAAGCCCCAAAGAAAATTCAAGAAAAAAGAATAA 1593 0.4237 MEEITSTVAVPYTLGNLKQKESGVTTHMEITGLKLRANTASALKFNPAIEGSQSNSVGSENYSDIGPQPQIKVSSEGKGDQVGGHVVSKMVSQGDSNCFHSESQNKARNENESLLAKDSQCVDIFQSSAGDKNSPCREESSVLNTNCCEDNISHGKSSLIALVPVQNMVPAAMEHENEDGSGSDESDKKPFVVPCEMPEKQTCLELSGTTSTTPLWGCSSVCGRREEMEDAIAVRPHLFQVSSRMVMDDNVNENIKYSPAHFFGVYDGHGGCQVANYCREHLHSVLVDEVEAAQSSFYGENGRDNWEDQWKKTFSNCFQKVDDEVGGVEGDGASVESLASETVGSTAVVAILTQTHIIVANCGDSRAVLGRGKEAFPLSVDHKPNRDDEWERIEAAGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVKCVQRDKNDECLILASDGLWDVMTNEEACDIARKRILLWHKKNGNNNISSEQAQEVDPAAQYAAEYLSRLALQRGTKDNISVIVIDLKPQRKFKKKE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01418 530 Pfam Protein phosphatase 2C 239 513 IPR001932 -
Cca08g01418 530 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 117 530 - -
Cca08g01418 530 PANTHER ALPHABET, ISOFORM E-RELATED 117 530 - -
Cca08g01418 530 SUPERFAMILY PP2C-like 212 522 IPR036457 -
Cca08g01418 530 ProSiteProfiles PPM-type phosphatase domain profile. 215 520 IPR001932 -
Cca08g01418 530 CDD PP2Cc 217 520 IPR001932 -
Cca08g01418 530 Gene3D - 207 530 IPR036457 -
Cca08g01418 530 ProSitePatterns PPM-type phosphatase domain signature. 262 270 IPR000222 GO:0043169
Cca08g01418 530 SMART PP2C_4 205 518 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01418 Cca-Chr8 42341475 42345072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01418 141 529 PP2C-type Phosphatase Gene Family AT4G26080 52.709 3.62e-134 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01418 K14497 - gmx:100812974 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01418 08 42341475 42345072 Cca08g01418 08 42341475 42345072 ECH
Cca11g02501 11 52184382 52188594 Cca08g01418 08 42341475 42345072 PCT