Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01417 ATGAAGAAAGGGAACATAAGCTCGGATCTCAAACTCACTATTCCTGCATCTGATCAGGGTTCATTAACCATGTTCCGCTCTGACTCTGAAACCGGAACGTTCAAGGCTGGGGACTTGCTTGTTAACAAAGAAGGAGTTCGAATTGTATCTCAGAATGAAGTGGAAGCTCCACCCCCAATCAGGCCACTAGATAACCAATTAAGTTTGGCAGACATTGATACAATCAAAGTGGTTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTTCAACACAAATGGACTAATCAGTTCTTTGCATTAAAGGAAATTCCAATGAATATTGAGGAGCCTATTCGCAAGCAGATAGCACAAGAGCTAAAAATTAATCAATCAGCACAATGTCCAAATGTTGTTGTCTGCTACCATTCATTCTATCATAATGGTGTCATATCAATCATCTTAGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTCAACAAAGTTAAAACAATTCCAGAGTCATATCTTGCTGTCATCTGCAAGCAGGTGTTGAAGGGTTTAATGTATCTTCACCATGAAAAACATATTATCCACAGGGACTTAAAACCTTCTAACCTGCTGATAAATCATAGAGGGGAGGTAAAGATCACTGACTTTGGTGTAAGTGTAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACATACAGCTATATGTCTCCAGAGAGAATTATTGGTAATCAGCATGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCGGTTTCCGTATACACCACCGGATCAACGTGAAGGATGGGAAAATATTTTTCAGCTCATTGAAGCCATCGTGGAAAAGCCTTCTCCTAGTGCTCCATCAGATGATTTTTCTCCAGAATTTTGTTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACCGTCAGCTCGGGATCTTATAAATCATCCTTTTATCAAGAAAACATGCTATGTTCTAATCCTGGGCTTTATTCAAAGATATTACCCAAACTACAAGTGA 1065 0.3962 MKKGNISSDLKLTIPASDQGSLTMFRSDSETGTFKAGDLLVNKEGVRIVSQNEVEAPPPIRPLDNQLSLADIDTIKVVGKGNGGIVQLVQHKWTNQFFALKEIPMNIEEPIRKQIAQELKINQSAQCPNVVVCYHSFYHNGVISIILEYMDGGSLEDLLNKVKTIPESYLAVICKQVLKGLMYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSVIMENTSGQANTFIGTYSYMSPERIIGNQHGYNYKSDIWSLGLILLKCATGRFPYTPPDQREGWENIFQLIEAIVEKPSPSAPSDDFSPEFCSFISACLQKNPRDRPSARDLINHPFIKKTCYVLILGFIQRYYPNYK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01417 354 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01417 354 Coils Coil 353 354 - -
Cca08g01417 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 335 - -
Cca08g01417 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Cca08g01417 354 SUPERFAMILY Protein kinase-like (PK-like) 69 342 IPR011009 -
Cca08g01417 354 Gene3D Transferase(Phosphotransferase) domain 1 152 340 - -
Cca08g01417 354 PANTHER MAP KINASE KINASE 1 335 - -
Cca08g01417 354 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01417 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Cca08g01417 354 CDD PKc_MAPKK_plant_like 70 338 - -
Cca08g01417 354 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Cca08g01417 354 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01417 Cca-Chr8 42336373 42341143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01417 1 329 MAP Kinase Kinase Gene Family AT4G29810 65.179 5.96e-167 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Cca08g01417 Pkinase 3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01417 K20603 - gmx:100789241 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01417 08 42336373 42341143 Cca08g01417 08 42336373 42341143 ECH
Cca11g02502 11 52188970 52193994 Cca08g01417 08 42336373 42341143 PCT