Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01411 ATGAAGCCATTTCTCTGTTTGAATCTTTCTGATACCGAGTTCAATTGTTCACAAGTTGATTGTAATCACTCAATGGCTCATGCTTCTTATCCTTATGGAGATCCATTTTTCAGTTATGGACCACAGTTTACTAGTCAACCCCAAATTTTACCCCAGATGCTTGGACTTTCATCGGCCAGAGTAGCATTACCACTTGATCTTACAGAAGATGGACCAATTTACGTGAATGCGAAACAATACCATGGTATACTGAGAAGGAGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTCAGGGGATCCGGTGGCCGATTTCTCAGCACCAAACAGCTTCCACAGTCCAATGCAGAATATGTCACTGGTGCACATTCTGGTTCTGACCCCACAAACAATCCATCAGAGGGGGAAAGCCATTCCTCAAAAGCAGGAGATAATGCATCTTCCATCACAAGCTGCTCTGACCGGCCATGTCTATCCGGCAACAGTGTCAATTTTCGGCAACCGGAGTGCATTTTTCTGGGGAATTCTGCAAACATGGGTGGAGCACCACCGTGCAGTGGGGGACTCACCTTCGGCGGAACAAAGCAACGTGCTTCAGTTGTCCGGTGA 672 0.4658 MKPFLCLNLSDTEFNCSQVDCNHSMAHASYPYGDPFFSYGPQFTSQPQILPQMLGLSSARVALPLDLTEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLPQSNAEYVTGAHSGSDPTNNPSEGESHSSKAGDNASSITSCSDRPCLSGNSVNFRQPECIFLGNSANMGGAPPCSGGLTFGGTKQRASVVR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01411 223 SMART cbf3 68 129 IPR001289 GO:0003700|GO:0006355
Cca08g01411 223 MobiDBLite consensus disorder prediction 105 119 - -
Cca08g01411 223 MobiDBLite consensus disorder prediction 102 172 - -
Cca08g01411 223 ProSiteProfiles NF-YA/HAP2 family profile. 69 129 IPR001289 GO:0003700|GO:0006355
Cca08g01411 223 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 72 126 IPR001289 GO:0003700|GO:0006355
Cca08g01411 223 PRINTS CCAAT-binding transcription factor subunit B signature 72 94 IPR001289 GO:0003700|GO:0006355
Cca08g01411 223 PRINTS CCAAT-binding transcription factor subunit B signature 103 126 IPR001289 GO:0003700|GO:0006355
Cca08g01411 223 MobiDBLite consensus disorder prediction 127 172 - -
Cca08g01411 223 ProSitePatterns NF-YA/HAP2 subunit signature. 74 94 IPR018362 GO:0003677|GO:0016602
Cca08g01411 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 213 - -
Cca08g01411 223 Gene3D - 69 131 - -
Cca08g01411 223 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 213 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01411 Cca-Chr8 42186901 42190493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01411 40 135 CCAAT-HAP2 Transcription Factor Family AT1G54160 67.347 5.86e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca08g01411 CBFB_NFYA 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01411 K08064 - gmx:100793856 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01411 08 42186901 42190493 Cca08g01411 08 42186901 42190493 ECH