Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01409 ATGCTCACGTGCATCGCACGCCCCAAGAAACCCGGCGCCGACTCGGCCACCGAGGATCCGAGTTCGCGAGGGCAGGCGAAGTCGCTCACGGCGCAGATAAAGGAGATGGCGCTGAAGGCCTCGGGCGCCTACAAGCAGTGCGCGCCATGCGCGCCGCACCCGAGTCGGCTCAGCCGCGGCGACTCGGAGTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGCTGGAGGCGCGGCTGAAGGGGATATCGAGCGGCGAGGGGACGCCGAGCTCGAGCGGGCGGCGAGTGGTGCTGCTGCTggaggaggaggaggagcccaaggagtgggtggcgcaggtggagCCCGGCGTTCTCATCACCTTCGTCTCGCTTCCGCGTGGCGGGAACCACCTCAAAAGGATTCGATTCAGTCGCGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGATAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTGTCCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGTTCAAAGCGTGAATCAATAGAAGAGATCCCAGTGACACCTCCACTGAGCAGGGAAAGACCACCTTGTAATTTATACCGAGCAGGAGGTGGGGTCGGAATGGGGTACTCATCCTCAGATTCGTTTGATCATCAGTCAATGCAGTCCCGGCATTACTATGACCCGAATGGTGTGAACTCAACCCCAAAGGTGTCCACCATTAGTGCTGCTGCCAAGACAGATATCTCGTCAATCGATGCCGATGCTTCCTTAAGAAGTAGCTCATCAAGAGAAGCTGATCGCTCTGGGGAACTATCATTCAGCAATGCCAGTGATCTGGACAGTGAATGGGTTGAGCAGGACGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCAGGTGGCAAAAAGGAGCTCAGAAGAGTCAGGTTCAGTCGAGAAAAGTTTGGGGAGATGCATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1038 0.5328 MLTCIARPKKPGADSATEDPSSRGQAKSLTAQIKEMALKASGAYKQCAPCAPHPSRLSRGDSESESSRRRWGKELEARLKGISSGEGTPSSSGRRVVLLLEEEEEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAVPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNLYRAGGGVGMGYSSSDSFDHQSMQSRHYYDPNGVNSTPKVSTISAAAKTDISSIDADASLRSSSSREADRSGELSFSNASDLDSEWVEQDEPGVYITIRALPGGKKELRRVRFSREKFGEMHARLWWEENRARIHEQYL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01409 345 MobiDBLite consensus disorder prediction 262 286 - -
Cca08g01409 345 Pfam Transcription factor regulating root and shoot growth via Pin3 107 161 IPR013591 -
Cca08g01409 345 Pfam Transcription factor regulating root and shoot growth via Pin3 290 344 IPR013591 -
Cca08g01409 345 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 345 - -
Cca08g01409 345 MobiDBLite consensus disorder prediction 219 241 - -
Cca08g01409 345 Pfam Transcription factor BRX N-terminal domain 27 50 IPR027988 -
Cca08g01409 345 MobiDBLite consensus disorder prediction 171 204 - -
Cca08g01409 345 ProSiteProfiles BRX domain profile. 107 162 IPR013591 -
Cca08g01409 345 MobiDBLite consensus disorder prediction 220 241 - -
Cca08g01409 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Cca08g01409 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
Cca08g01409 345 MobiDBLite consensus disorder prediction 49 71 - -
Cca08g01409 345 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01409 Cca-Chr8 42092112 42100404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01409 1 345 Major Intrinsic Protein MIP AT1G31880 43.272 3.35e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01409 - - gmx:100791360 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01409 08 42092112 42100404 Cca08g01409 08 42092112 42100404 ECH
Cca11g02516 11 52304962 52309310 Cca08g01409 08 42092112 42100404 PCT