LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01405	ATGGATATCATGACTGCCTTACAACTTGTCCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCATTAAAAGTGATTGAGAAGCATGTTGCACAGTTCTGTGTTCTAGCAGAAGACTGTGACCAACCTGACTATGTTAAACTTGTTAAGGCCCTTTGCGCAGAGCACAATGTTAGCCTGTTGACGGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTGGTGTAAGCGTCATTCACAATGAACCTTAA	264	0.447	MDIMTALQLVLRKSLAYGGLARGLHEALKVIEKHVAQFCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGVSVIHNEP	87

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01405	87	ProSitePatterns	Ribosomal protein S12e signature.	6	24	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca08g01405	87	SUPERFAMILY	L30e-like	1	82	IPR029064	-
	Cca08g01405	87	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	6	82	IPR004038	-
	Cca08g01405	87	PRINTS	Ribosomal protein S12E family signature	10	23	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca08g01405	87	PRINTS	Ribosomal protein S12E family signature	65	86	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca08g01405	87	PRINTS	Ribosomal protein S12E family signature	24	40	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca08g01405	87	PANTHER	40S RIBOSOMAL PROTEIN S12	1	86	-	-
	Cca08g01405	87	Gene3D	-	1	87	IPR029064	-
	Cca08g01405	87	PANTHER	40S RIBOSOMAL PROTEIN S12	1	86	IPR000530	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01405	Cca-Chr8	41971724	41971987	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01405	1	86	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	72.093	1.33e-42	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01405	K02951		-	gmx:100500093	155.992