Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01404 ATGGAAGAAGGAAGAGCCGTGGCGGACAAGAAAGTGACAAAGAACGAGGTTGTTCTTCGAATTTCAGACACCGGAGAAGCCATGTATGGAAAGAAGGAGCAAGCAGATTGTAGAAGTTTCCCCGTAGCTGAAAGCACTTCCCTTTCTCCGCAGAACAATACCCAAATGGGTAAAGGGTTCAGAGATTTACGTGCTACACTCACAGGGCTTGAGAATGTGAGAAAGGGTCAAGTTTCCTCGGAGTCGGTAACAATAGCAAGTGCTCGAAGGTTGATGGGTCGGTCGGAATTTTCGAAGCCGAAGTCCAGAATGGTGGAGCCACCGCATCCAAAAGATGCAAACTTTGTTGAAGGAAAGGGTCAAATGAAAAGTCCCAATTCATCTGCAAGGAATTCTCCTAACAAGAGTGCTGCAGTTATTTCTCCAAGGGATGGTATTGTTCTTGAAGCAACAACTATTGTTACCCCGAGAGCCCCCTTGCTTGGGACTCCAGGGgaagaagaagatgaagatgaagaagTGTACAAGACTGCAAATATTGAAGTGAGTAAGAGATCTGGTAAGAAGTGGAGAGTATTGGGTTTTGTTGAGTGGTTTGCTTTAGTTTGCTTAGTGGGGTTTTTTATTGCAACCTTGACTGTTCATAAGTTGCAACAAAGGACAATTTGGGGTTTGGAACTGTGGAAATGGTGTGTGTTGGTACTGGTTATACTATGTGGTAGATTGGTCACTGAGTGGTTTATCAATGTTCTGGTTTTTCTGACTGAGAGGAACTTCTTGTTTAAGAAGAAGGTTTTATATTTTGTTTATGGTGTGAAGAGCAGTGTTCAGGCCTTTATATGGCTAGGTTTGGTTCTTTTGACATGGGACCTGCTTTTCAACCATGGAGTGAAGAGAACCAGCAGAGTTACTAGGATTCTAAATTACATTACTAGGACCCTTGGTTCTTGTCTTATTGGAGCAGCTATATGGTTGGCAAAACAATTGTTGATAAAGCTGTTAGCTTCAAAATTTCAATCTACTAGGTTTTTTGACAGGGTGCAAGAATCAATTTTTCATCAATACATTCTGAGGATTCTCTCGGGTCCTCCCTCGATGGAGATGGCCGAAAAAGTAGGCAATACTTCGAGTAGTGGCCGGCTCAGTTTTAAGACCATGACTAATGAGAATGAAGGGGAGAAAGAACAAGTCATTGATGTAGAGAAGCTCAAGAAAATGAAACAAGAGAAGGTTTCTGCTTGGACTATGAAAGGGTTGATTAATGTGATAAGGAGTTATGGGTTGTCTACCATGTCCTATTCGCCAAATAGTGCCGATGAAGATGAGATTGACCAGAAAGATTATGAAATTACTAGTGAGTGGGAAGCAAAGGCAGCTGCTTATCAAATTTTCAGGAATGTAGCCAAACAAGGAAACAAGTATATTGAGATGGATGACCTCTTGAGATTCATGAAAAAGGAAGAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGGAGTTGCGACTGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTATCTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAATACAGCAGTTGATGACTTGAATATGCTTGCTTCTGTAATTGTGCTTATTGTGATCATTATTGTGTGTCTTCTTATAATGGATTTATTGACGACTCAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTGTTTGAAGCTATTATATTTATTTTTGTAATGCACCCATTTGATGTTGGTGATCGCTGTGTCATTGATGGTGATCAGATGATTGTGGAAGAGATGAACATACTGACTACAGTATTTTTGAAAAGTGACAACGAAAAGATTTTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCAGTTGAATTTGCTGTTGATATTTCTACTTCTATAGAAAGTATTGGAGCTTTAAAGGCCAAGTTAAAAGCATATTTGGAAAGTAAGCCTCAACACTGGCGCCCCAACCACAGCATAACGGTTaaggatattgagaatgtaaataagatgaaaatgaGTCTATCCGTCAATCACACCATAAATTTTCAGAATTACGGGGATAAGAGCAGCCGAAGATCTGATTTGGTCCTGGAGTTAAAGAAAAATCTTGAAGAACTTAATATTAAATATCATCTGCTGCCACAAGAAGTTCATCTCAGTTATGTAAGGTCATAA 2283 0.3929 MEEGRAVADKKVTKNEVVLRISDTGEAMYGKKEQADCRSFPVAESTSLSPQNNTQMGKGFRDLRATLTGLENVRKGQVSSESVTIASARRLMGRSEFSKPKSRMVEPPHPKDANFVEGKGQMKSPNSSARNSPNKSAAVISPRDGIVLEATTIVTPRAPLLGTPGEEEDEDEEVYKTANIEVSKRSGKKWRVLGFVEWFALVCLVGFFIATLTVHKLQQRTIWGLELWKWCVLVLVILCGRLVTEWFINVLVFLTERNFLFKKKVLYFVYGVKSSVQAFIWLGLVLLTWDLLFNHGVKRTSRVTRILNYITRTLGSCLIGAAIWLAKQLLIKLLASKFQSTRFFDRVQESIFHQYILRILSGPPSMEMAEKVGNTSSSGRLSFKTMTNENEGEKEQVIDVEKLKKMKQEKVSAWTMKGLINVIRSYGLSTMSYSPNSADEDEIDQKDYEITSEWEAKAAAYQIFRNVAKQGNKYIEMDDLLRFMKKEEVENVLPLFEGGVATGRIKRKSLKNWLVKVYLERRSLVHSLNDTNTAVDDLNMLASVIVLIVIIIVCLLIMDLLTTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFIFVMHPFDVGDRCVIDGDQMIVEEMNILTTVFLKSDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDISTSIESIGALKAKLKAYLESKPQHWRPNHSITVKDIENVNKMKMSLSVNHTINFQNYGDKSSRRSDLVLELKKNLEELNIKYHLLPQEVHLSYVRS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01404 760 SUPERFAMILY Sm-like ribonucleoproteins 589 648 IPR010920 -
Cca08g01404 760 Gene3D - 599 648 IPR023408 -
Cca08g01404 760 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 11 758 IPR016688 -
Cca08g01404 760 MobiDBLite consensus disorder prediction 120 137 - -
Cca08g01404 760 MobiDBLite consensus disorder prediction 98 113 - -
Cca08g01404 760 Pfam Mechanosensitive ion channel 541 745 IPR006685 GO:0016020|GO:0055085
Cca08g01404 760 PIRSF Memb_At2g17000 10 760 IPR016688 -
Cca08g01404 760 MobiDBLite consensus disorder prediction 98 137 - -
Cca08g01404 760 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 11 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01404 Cca-Chr8 41965515 41969185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01404 87 756 Mechanosensitive Ion Channel Family AT5G12080 50.815 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01404 K22048 - gmx:100777332 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01404 08 41965515 41969185 Cca08g01404 08 41965515 41969185 ECH