Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01402 ATGTCGGTGAATCTGACGGCAAACGCGATTCCGGCGATAATCGGCGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTGGACGTGGCGTTAGTCTCCAATACCAATAACTCGCAGCAGCAGAGATACAAACTTCTGCTATCCGACGCCGTTTTTTCTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGTATCCGAACCGGCCGAGTTCAGAAGGGTTCCGTCGTTCAGCTTCTCGATTACATATGCACTCCTCTCAAGAACCGCAAGATAATTGTGGTTCTCAACATGGAAACTATAATACCTGATTGTGAGATCATTGGGAATCCGAAGCCATATATGGATTCTGATTTACCAAGTGTGGGAACTAAAGCTGATAACACTGTGGAGAATTTGCCCAGGAGTAACAACAATAACAATTCTGCTGCTCAAAATGCAAGCCATAATGCGCAGAATTTCAGGCCAACAATTCAACCTCCATATCAACCGCCTCCAGTTTACAAAGGCCGTGGGGCAATTTTGAAAAATGAGGCACCGGCACGCATCATTCCTATTGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTATAATAATGCCCGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAATGTAATCGAGGTTGGTAAAGTTTACATGATATCCAAAGGTAACTTAAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTTGAGCTTTGCCCAGATGAGGATGATTCTATACCTAAACAGCAGTTCTCCTTCAGGCCTATCAGTGACATTGAGAATGCTGACAATAACTCCATCCTTGATGTTATTGGAGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAAAGAAGAATTTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGTGAATTCTGCAACAGGGAAGGTCAAAAGCTGCAAGAGATGGTGGATGCTGGGTTTTTCCCAATATTGGCAGTCAAAGCCGGGAAGGTGAATGACTTTAGTGGAAAGTCTGTAGGCTCTATTTCTACCACACAACTTTTCATAAATCCTGATTTCCCTGAGGCTCATAGCTTAAGAGAATGGTTTGATCGAGTAGGAAAAGATTCTGCTTCCTTATCCATTTCTAAGGACATTATTCCCGGAGGACCAAAGAATGAGATACGCAAAGCTGTGTCCCAAATCAAGGATGAAGGTCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTAAGGGCAGCCATATCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTTACTAGGTCTGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATCAGACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGAGTACTCAGCAAAGGAGCTGTACTTTTTGAAATATGAACAGCAGGATGATGAAAAGTTTGGAGAGATAATCAAGAGCAGACTCTTCAACCAGTTTGTGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTGAAGATTACTGTAGTCAAGGCAGATAAGTTGAATTATTCTTCAGAGAGTAGCTACATGCTTGATTTGATTTCCAAGTTTTGTAGGCAGTAA 1890 0.4333 MSVNLTANAIPAIIGGDVNAKPLVQVLDVALVSNTNNSQQQRYKLLLSDAVFSHHAMLATQLNDRIRTGRVQKGSVVQLLDYICTPLKNRKIIVVLNMETIIPDCEIIGNPKPYMDSDLPSVGTKADNTVENLPRSNNNNNSAAQNASHNAQNFRPTIQPPYQPPPVYKGRGAILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGNLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPKQQFSFRPISDIENADNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQKLQEMVDAGFFPILAVKAGKVNDFSGKSVGSISTTQLFINPDFPEAHSLREWFDRVGKDSASLSISKDIIPGGPKNEIRKAVSQIKDEGLGRSDKPDWITVRAAISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDQTGLTWVTAFQEAGEEIMEYSAKELYFLKYEQQDDEKFGEIIKSRLFNQFVFRLKIKEELYGDEQKVKITVVKADKLNYSSESSYMLDLISKFCRQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01402 629 MobiDBLite consensus disorder prediction 134 161 - -
Cca08g01402 629 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca08g01402 629 Gene3D - 3 115 IPR012340 -
Cca08g01402 629 PANTHER REPLICATION FACTOR A 1, RFA1 2 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca08g01402 629 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 625 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca08g01402 629 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca08g01402 629 Gene3D - 182 292 IPR012340 -
Cca08g01402 629 MobiDBLite consensus disorder prediction 134 157 - -
Cca08g01402 629 SUPERFAMILY Nucleic acid-binding proteins 300 427 IPR012340 -
Cca08g01402 629 Gene3D - 294 433 IPR012340 -
Cca08g01402 629 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 623 - -
Cca08g01402 629 CDD RPA1_DBD_C 452 625 IPR013955 -
Cca08g01402 629 CDD RPA1_DBD_A 185 288 - -
Cca08g01402 629 Gene3D - 439 627 IPR012340 -
Cca08g01402 629 CDD RPA1_DBD_B 317 424 - -
Cca08g01402 629 Pfam OB-fold nucleic acid binding domain 197 280 IPR004365 GO:0003676
Cca08g01402 629 SUPERFAMILY Nucleic acid-binding proteins 182 296 IPR012340 -
Cca08g01402 629 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Cca08g01402 629 SUPERFAMILY Nucleic acid-binding proteins 449 626 IPR012340 -
Cca08g01402 629 Pfam Replication protein A OB domain 306 410 IPR031657 -
Cca08g01402 629 Pfam Replication factor-A C terminal domain 468 618 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01402 Cca-Chr8 41947672 41950815 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01402 26 625 Core DNA Replication Machinery Family AT2G06510 70.081 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01402 K07466 - gmx:100792409 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01402 08 41947672 41950815 Cca08g01402 08 41947672 41950815 ECH