Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01398 ATGTCAGTGAATCTGACGGAAAACGCGATTCCGGCGATAATCGGCGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTGGACGTGGCGTTAGTCTCCAATATCAATAACTCGCAGCAGCAGAGATACAAACTTCTGCTATCCGACGCCGTTTTGTCTAAACAAGCGTTGCTCGCCACTCAGCTCAACGACCGTGTCCGAACCGGCCGAGTTCAGAAGGGTTCCGTCGTTCAGCTTCTCCATTACATATGCACACCTATCAAGAACCGCAAGATAATTGTGATTCTCAACATGGAAACTATAATACCTGATTGTGAGATCATTGGGAATCCGAAGCCATATATGGATTCTGATTTACCAAGTGTGGGAACTAAAGCTGATAACACTGTGGAGAATTTGCCCAGGAGTAACAACAATAACAATTCTGCTGCTCAAAATGCAAGCCATAATGCGCAGAATTTCAGGCCAACAATTCAACCTCCATATCAACCGCCTCCTTACAAAGGCCGTGGGGCAATTTTGAAAAATGAGGCACCGGCACGCATCATTCCTATTGCTGCTTTAAATCCTTATCAAGATGTGGTTGCATACACCGCAATGGTGCCATCATATGGAGACACGTATGGTTGGATTATGGCTTCTGATGAACGAATGAATCTTGATGCTGAAGCACTGAACAACAAGATAGGGGAAAGAATCACGGGGGAGTTAAGATATCTCGATGGGCCTGTCATTGTGGTGTCTACGATTCTGAACAAGACATTGAGAAACTCACTAATGGAAGAGACTCGTATCTTAACCGATGAAACGATGACGGTGGGATATGTTCGCAAACCAGGAGTTCGCCGTTATGATGCTTAG 861 0.4588 MSVNLTENAIPAIIGGDVNAKPLVQVLDVALVSNINNSQQQRYKLLLSDAVLSKQALLATQLNDRVRTGRVQKGSVVQLLHYICTPIKNRKIIVILNMETIIPDCEIIGNPKPYMDSDLPSVGTKADNTVENLPRSNNNNNSAAQNASHNAQNFRPTIQPPYQPPPYKGRGAILKNEAPARIIPIAALNPYQDVVAYTAMVPSYGDTYGWIMASDERMNLDAEALNNKIGERITGELRYLDGPVIVVSTILNKTLRNSLMEETRILTDETMTVGYVRKPGVRRYDA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01398 286 Gene3D Vaccinia Virus protein VP39 184 279 IPR029063 -
Cca08g01398 286 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 207 - -
Cca08g01398 286 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Cca08g01398 286 PANTHER REPLICATION FACTOR A 1, RFA1 2 207 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca08g01398 286 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca08g01398 286 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca08g01398 286 Gene3D - 3 115 IPR012340 -
Cca08g01398 286 MobiDBLite consensus disorder prediction 134 157 - -
Cca08g01398 286 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01398 Cca-Chr8 41826388 41830641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01398 26 206 Core DNA Replication Machinery Family AT2G06510 44.388 4.17e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01398 K07466 - ccaj:109793065 352.829