Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01394 ATGATCAGTTCCCACATGGATAGAAAAGCCTATTGCCAGAAAGAAAGGGCTTGGTCCTCTGAGGAAGACGAAATCCTTGTAAACTACATTCAAGTTCATGGAGAAGGAAATTGGAGAGACATTTCCATAAGAGCTGGTTTGGAGCGATGTGGTAAGAGTTGCAAACACCGATGGTTGAACTATCTCAAGCCAACCATGCATAGAGGAAACATTTCTGTGGAAGAAAAGGAACTCATAATCAGACTGCATAAGCTCTTGGGAAATAGGTTCATGgattttagattagtgatgttagttttagattttgatatttcagaAATAATCGTGTCTCTTTCTTTAAGAGTTTTCATTTTCCTAAAATAA 363 0.3471 MISSHMDRKAYCQKERAWSSEEDEILVNYIQVHGEGNWRDISIRAGLERCGKSCKHRWLNYLKPTMHRGNISVEEKELIIRLHKLLGNRFMDFRLVMLVLDFDISEIIVSLSLRVFIFLK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01394 120 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
Cca08g01394 120 ProSiteProfiles Myb-like domain profile. 14 62 IPR001005 -
Cca08g01394 120 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 90 - -
Cca08g01394 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Cca08g01394 120 PANTHER TRANSCRIPTION REPRESSOR MYB6-LIKE 8 90 - -
Cca08g01394 120 SUPERFAMILY Homeodomain-like 16 91 IPR009057 -
Cca08g01394 120 CDD SANT 17 62 IPR001005 -
Cca08g01394 120 SMART sant 14 64 IPR001005 -
Cca08g01394 120 Gene3D - 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01394 Cca-Chr8 41704882 41705535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01394 7 90 MYB Transcription Factor Family AT5G40330 53.571 1.63e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g01394 Myb_DNA-binding 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01394 K09422 - gmx:778159 132.88