Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01393 ATGGAAAGCAAGACCTGCTGTGAAAACGAAGGGGCATGGTCTTCTCAGGAAGAGGGTATCCTTATCAACTACGTTCAAGTCCATGGAGAAGGAAATTGGGGTGACCTTCCCTTAAGAGCTGGCTTGAAACGATGTGGTGAGAGTTGCAAACACCGATGGTTGAACTATCTCAAGCCTAGAGGAAGAAACATTTCTTTGGATGAACAAGAGCTCATAATCAGACTGCATAAGCTCTTGGGGAATAGGTGGTCTATCATTGCAGGAAGGTTGCCTGGACGCACTGAGAATGAGATCGAGAACTTTTGGAATACACATTTTAGTAAGAAAGAAGGAGAGAAGCCCAACAACAACGAAAAACCAAGCACAAGTGTAGCCACAACTAGTAAAATGCCTAGTTTTCAATCTTTCAAGTGCACCAAATTGTGTAGTGATTCTACAGAATCTACCTACCCTGTGATTAAACCTAAAGTTGTGAGGTTAACCAAGTCTGTCTGTCATGCCACACACAAAGGATGGAAAAGCCACTATCCTTGA 534 0.4307 MESKTCCENEGAWSSQEEGILINYVQVHGEGNWGDLPLRAGLKRCGESCKHRWLNYLKPRGRNISLDEQELIIRLHKLLGNRWSIIAGRLPGRTENEIENFWNTHFSKKEGEKPNNNEKPSTSVATTSKMPSFQSFKCTKLCSDSTESTYPVIKPKVVRLTKSVCHATHKGWKSHYP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01393 177 Gene3D - 9 63 - -
Cca08g01393 177 CDD SANT 65 106 IPR001005 -
Cca08g01393 177 Gene3D - 64 132 - -
Cca08g01393 177 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 127 - -
Cca08g01393 177 CDD SANT 12 57 IPR001005 -
Cca08g01393 177 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 59 IPR017930 -
Cca08g01393 177 MobiDBLite consensus disorder prediction 106 126 - -
Cca08g01393 177 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Cca08g01393 177 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Cca08g01393 177 ProSiteProfiles Myb-like domain profile. 65 106 IPR001005 -
Cca08g01393 177 SUPERFAMILY Homeodomain-like 11 102 IPR009057 -
Cca08g01393 177 PANTHER TRANSCRIPTION REPRESSOR MYB6-LIKE 4 127 - -
Cca08g01393 177 SMART sant 60 108 IPR001005 -
Cca08g01393 177 SMART sant 9 59 IPR001005 -
Cca08g01393 177 Pfam Myb-like DNA-binding domain 65 105 IPR001005 -
Cca08g01393 177 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01393 Cca-Chr8 41677177 41688798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01393 1 164 MYB Transcription Factor Family AT4G21440 42.077 2.27e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g01393 Myb_DNA-binding 8.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01393 K09422 - gmx:778159 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01393 08 41677177 41688798 Cca11g02526 11 52403230 52404402 PCT