Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01389 ATGATGAATGGAAGGAACAGGTTCCCCTTTACCCCATCACAGTGGCAAGAGCTGGAGCACCAAGCTCTTATCTACAAGTACATGGCTTCAGGTATTACCATTCCACCTGATCTTCTCTTCACCATAAAAAGGAGCTACTTTGATTCCCCTCTGTCCTCAAGGCTTTTGCCTAGCCAGCCACAGCACTTTGGATGGAACTACCTGCAGATGGGTTTGGGGAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACTGATGGCAAGAAATGGAGGTGCTCAAAGGAGGCATATCCTGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAaacaacagcatcaacaacaacatcaaacacaaatgctgcatcaacacatgcaatctcatcaatcaccaaaaacagtaacaCCCTTTCACCTCTTGCATCATCTGAAACACACCAACACTCTTGCTATGGCTCCTTTCTCTACCACCACCCTCCATCAAGGTCCTCTGGCATTGGCTTGTCATTTGAAGACAACAACAGTACTCCCTTGTTCCTTGACACTGGCTCTTGCTCTCAGTCCAACACAGACTGCAGGAGCAGGTATGTTTATGGAGAGAAAGAAGAGGTGGATGAGCATGCTTTCTTCACTGAGCCATGTGGTGTTATGAAAAGCTTCTCTGCTTCCTCTATGGATGAGCCTTGGCAACTAGCACCGTTGACTATGAGTTCCTCATCTTCTTCTTCCAAACAGAGGAGTTCCTTTGGCTTGTCCAATGATTACTCGTGCTTGCAACTTCAGAGCCACTCAAAGCAACAAGAGCAACAAGATCAGGGTAATTGCTACATGCTAAGTGGTCAACGCGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGAAGAGAAGCCTCTTGGCTTGATTTGGATGATAAATCTTCCACAACCCAACTTTCAATCTCCATTCCCACTTCTCATGATTTTCCAACCTTCAGCTCAAGAACTCACCATGATGGTTGA 1065 0.4282 MMNGRNRFPFTPSQWQELEHQALIYKYMASGITIPPDLLFTIKRSYFDSPLSSRLLPSQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTASTTTSNTNAASTHAISSITKNSNTLSPLASSETHQHSCYGSFLYHHPPSRSSGIGLSFEDNNSTPLFLDTGSCSQSNTDCRSRYVYGEKEEVDEHAFFTEPCGVMKSFSASSMDEPWQLAPLTMSSSSSSSKQRSSFGLSNDYSCLQLQSHSKQQEQQDQGNCYMLSGQRGKEEPQKTVHRFFDEWPHKGREASWLDLDDKSSTTQLSISIPTSHDFPTFSSRTHHDG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01389 354 PANTHER - 2 345 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca08g01389 354 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca08g01389 354 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca08g01389 354 Pfam WRC 78 120 IPR014977 -
Cca08g01389 354 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Cca08g01389 354 PANTHER GROWTH-REGULATING FACTOR 6 2 345 - -
Cca08g01389 354 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca08g01389 354 MobiDBLite consensus disorder prediction 332 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01389 Cca-Chr8 41611055 41613276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01389 7 120 GRF Transcription Factor Family AT3G13960 71.053 1.48e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca08g01389 WRC 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01389 - - gmx:100781613 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01389 08 41611055 41613276 Cca08g01389 08 41611055 41613276 ECH
Cca11g02530 11 52443436 52445719 Cca08g01389 08 41611055 41613276 PCT