Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01373 ATGACCCTTATGAAAACAATATGGAAATCGATCTTCCCCGGTTGTTACAAGGGTGAGTACCCCTCTCCAAAGCCGAAGAAAGTGGTGGCTACGAAGCCAAATTCTTCTCACAGGATTTCTGTGACGGATTTGAGTTATCCAAGCATGACTCTTTCGGAGGATCTTTCAATTTCTCTGGCGGGAACTAACTTGCATGTTTTTTCGCTTGCGGAGCTTAAGATTATAACACAGCAATTTTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTCGGACCAGTGCATAAAGGGTTCATTGATGACAAGCTTAGGCATGGTCTTAAGGCTCAACCCGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCACAGGGGCATAAAGAGTGGTTGACTGAAGTTGTTTTTCTTGGGCAACTAAGGCATCCACATCTCGTGAAACTCATAGGATACTGCTGTGAAGAAGAGCACAGGCTTTTGGTATATGAATATTTACCAAGAGGCAGCTTGGAGAATCAATTATTTAGAAGATTCTCGGCATCACTACCATGGTCAACGAGAATGAAAATTGCTGTTGGAGCTGCCAAGGGTCTAGCCTTTCTTCATGAAGCCGAGAAGCCAGTTATTTATAGAGATTTCAAAGCTTCTAACATATTGTTAGACTCTGATTACAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGATACCCACGTTTCGACCCGAGTTATGGGCACACACGGCTACGCAGCCCCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTAGTGCTATTGGAGCTGCTAACAGGGAGAAGGTCAGTGGACAAGAATCGTCCTCCAAGGGAACAGAACCTAGTGGAGTGGGCAAGGCCAATGTTAAATGACCCTAGGAAACTCAAGAGAATAATGGATCCTAGACTTGAAGGCCAATATTCTGAAATGGGGACAAAAAAAGCAGCAGCATTGGCTTACCAATGTCTCAGCCACAGGCCAAGAAGTAGACCCTCAATGAGCACAGTGGTTAAGACCCTTGAGCCACTCCAGGATTTTGATGATATTCCAATTGGAACATTTGTTTACACTGCTCCACCGGATAATAGTAATGAAGTGCCAAGGGAATTTGATACACCTAGGAAGAGGGAAAATAATAATGGTCACGTTCAAAGGAACCACCATCATAGGCTTCATCCACTTAGATCACCTAAGTACTCTCCAAAGCCAATGTCACCTTCAATGAATGACCACAAACAACGAAATGGGAGAGGAAGTGGACCAAACTCTCCTCCATCACATGTGAAAAGGCCAGGAATTATTGCCTAA 1356 0.4417 MTLMKTIWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSMTLSEDLSISLAGTNLHVFSLAELKIITQQFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDPRKLKRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPRSRPSMSTVVKTLEPLQDFDDIPIGTFVYTAPPDNSNEVPREFDTPRKRENNNGHVQRNHHHRLHPLRSPKYSPKPMSPSMNDHKQRNGRGSGPNSPPSHVKRPGIIA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01373 451 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 23 409 - -
Cca08g01373 451 Gene3D Phosphorylase Kinase; domain 1 40 161 - -
Cca08g01373 451 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Cca08g01373 451 MobiDBLite consensus disorder prediction 418 438 - -
Cca08g01373 451 MobiDBLite consensus disorder prediction 370 451 - -
Cca08g01373 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cca08g01373 451 MobiDBLite consensus disorder prediction 397 412 - -
Cca08g01373 451 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
Cca08g01373 451 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01373 451 PANTHER OS01G0588500 PROTEIN-RELATED 23 409 - -
Cca08g01373 451 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Cca08g01373 451 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01373 Cca-Chr8 41360533 41363775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01373 65 385 Glycoside Hydrolase AT3G07070 52.160 4.09e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca08g01373 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01373 - - gmx:100797003 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01373 08 41360533 41363775 Cca08g01373 08 41360533 41363775 ECH
Cca11g02542 11 52575787 52578281 Cca08g01373 08 41360533 41363775 PCT