Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01364 ATGGCATGCGAGTCCAACCAAGTTTCTGCCACCAACACGCTCCAATCCATTTGCTACAACCGCGGTTCCCTTCAGCTTCTCGATCAGAGAAAGCTCCCTTTAGAAACACTTTACTTGGACATTCGGGATTCCACTGATGGCTGGAATACCATTCGGGATATGGTGGTCCGCGGAGCACCTGCTATTGCGATTGCAGCAGCGCTCTCTTTGGCTGTGGAGGTGTTCAATTTAGATGATTTTAATGGGTCAGCTGGTGATGCTGTTTCCTTCCTGCAGAAGAAATTAGAGTATCTTGTCTCAAGTCGGCCAACAGCAGTGAACCTATCAGATGCTGTGACAAAACTCAAAGAAGTCATATCAAATGCAGCTGCTACCACTTCAGAAGGCAAGAGTGTTTTCCAGGCATATGTAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCCTCAAATAAAGCTATTGGTTCTTATGGAGCTAGTTTTATTCAACAATTAACAAAGAAACAAAAGCTTTCTGTTTTGACTCATTGCAATACTGGAAGTTTAGCCACAGCAGGATATGGTACTGCTCTGGGTGTGATCCGTGCGCTTCACAGTGGAGGAGTTCTAGAAAGGGCTTTTTGCACAGAAACACGCCCATTCAATCAAGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCAGATTCTGCTGCAGCTGCATTGATGAAAGCAGGACGCGTGGATGCTGTTGTTGTTGGGGCAGATCGTGTTGCATCAAACGGTGATACAGCCAACAAAATTGGAACATACAGCGTTGCCTTGTGCGCTAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCCTGACTTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGGTCCCCCAAGGAATTGTTGAACACACATGGAGGACTTGGAGAGCAGATTGCTGCCTCTGGAATTTCTGTGTGGAACCCAGCTTTTGATGTTACTCCTGCTAATCTAATATCTGGGATCATAACTGAGAAGGGTGTTATTACGAAGACATCTGCTGGTGATGCTTTTGACATAAAAGCTTTCGTACAGAAAACAGCTAACCCTATTATTCACTGTCCAATTTCAATTTCTGTGTCACCGTGGAAAAGAAAAACCCGCGAAAGGCTTTGTACTGAGCAATACGCGAAACCCTTCGATCAAAGGTTGGATATGAATATGCAGAAGAAGTCGCTATTGCCACTGAACGACGCGAATGCGAACAAGAGGAAGGCGTTGTGCAGCAAGGAAACTTTGGTGAAGCTTCTTAGACGGCATTTTGGGTACGCTGATTTCAGGGGCATGCAATTGGATGCTATTCAGGCCGTGCTCTCAGGAAAAGATTGTTTTTGTCTAATGCCAACTGGAGGAGGCAAGTCGATGTGTTTTCAGATTCCTGCGCTTGCAAAATCAGGAATAGTGCTTGTTGTTTGTCCTCTAATAGCCTTAATGGAAAACCAAGTAATGGCACTAAAGGAGAAAGGAATTGCTGCTGAGTTTCTCTCCTCAACAAAAACAACGGATGCAAAAGCAAAGATTCATGAGGACCTAGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGGTTTATGTCAAAGCTGAAAAAGGTTTATGCTAGGGGTTTGCTAAATCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAGGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCAGTGCCTAAGGTTCAGAAGGATGTAGTTGAATCCTTGCAGATGGAAAATCCACTAATACTCAAGTCTTCCTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTTTGCTGATTTATCTAATACACTAAAGTCTCTGGGAGAAGTCTGTGCAATAGTGTACTGCCTGGAACGTTCAATGTGTGATGACTTGTCAGCTAATCTATCCCAAAGTGGCATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCCAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGATAGAAAGGATGTTAGAATTGTGTGTCACTTCAATATTCCCAAGTCAATGGAATCATTCTATCAAGAATCAGGCAGAGCAGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGGTAGATGACCGCAAAAGAATGGAATTTATATTAAGAAAATCGGGGAGCACGAAGTCTCAGTCATCTAGTTCACAAGAAGAATCATCTAAAACGTCACTGATTGCTTTCAATCAGATGGTTGAATATTGTGAAGGACCTGGATGTCGCAGGAAAAGGATTCTCGAGAGTTTTGGGGAACAGGTAACAGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATCCAAATTTAGTTGCCAGATATTTGGAGGATCTCACAACTGCTTGTGCTCTACGCCAGAAAAATGGTTCTTCTCGAGTTTTTATAACCAGTTCTACTGATGCAATTGACAGAGAACAGATATCTGAATTCTGGAACCGGGATGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGATGATGTTAATGAGGTTGTCAACAACCTACCCCGATCAAAGCTTCAATCCAGATTGGGAGTTAATGAAAAGCTTGCTATGCTACAACGAGCTGAAGAAAACTTCTATCGAAATAATAACACTTATAAACAGAGCAACAAAGTTGACAAAAATGCTATTTCTGATTCAATGCGAGATGCAAGCAGGAAAAGGTTACAAAATGCTCTAAAGCAAGTTCAGCAACGGCTTGACAACTTCAAGATTGAAATGGAAGCATCAGCATCTTTTCTTGAAGATGAATGCTACAAGAAATATGGCAAGACTGGCAAATCATTTTATTATTCCCAAGTGGCAAGTACTGTAAGATGGCTGACAACCGCAAGTTCTACCGAATTGATGAGCCGACTTTGTGCAATTAATGCTTCCACCACAAAGAATGTCGTGTCTGAAGCTGAACAGCCCCTCACATCGCCGCCTGCTTTAGAAGATACTTGTGCAGGAGATACCAGCAATGAACACTCGGGCAATGCTAGATCAGAAACTTCCCCATGTGTTGTGCCAATAGAAAGTTCTTCGTTTAGTACTAAGTTGCCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAGCAAAAGGGGACCCATTAAATGACACAAAAATGCATTCATCAAGAGTCGAAAAGAAAATGAGGATACAGTAG 3417 0.4211 MACESNQVSATNTLQSICYNRGSLQLLDQRKLPLETLYLDIRDSTDGWNTIRDMVVRGAPAIAIAAALSLAVEVFNLDDFNGSAGDAVSFLQKKLEYLVSSRPTAVNLSDAVTKLKEVISNAAATTSEGKSVFQAYVDAAEVMLEDDVASNKAIGSYGASFIQQLTKKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAFCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNTHGGLGEQIAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFVQKTANPIIHCPISISVSPWKRKTRERLCTEQYAKPFDQRLDMNMQKKSLLPLNDANANKRKALCSKETLVKLLRRHFGYADFRGMQLDAIQAVLSGKDCFCLMPTGGGKSMCFQIPALAKSGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTTDAKAKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLKKVYARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRGHLPDVPILALTATAVPKVQKDVVESLQMENPLILKSSFNRPNIYYEVRYKDLLDDAFADLSNTLKSLGEVCAIVYCLERSMCDDLSANLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGMGIDRKDVRIVCHFNIPKSMESFYQESGRAGRDQLPSRSLLYYGVDDRKRMEFILRKSGSTKSQSSSSQEESSKTSLIAFNQMVEYCEGPGCRRKRILESFGEQVTASLCGKTCDACRHPNLVARYLEDLTTACALRQKNGSSRVFITSSTDAIDREQISEFWNRDEEASGSEEDISDSDDVNEVVNNLPRSKLQSRLGVNEKLAMLQRAEENFYRNNNTYKQSNKVDKNAISDSMRDASRKRLQNALKQVQQRLDNFKIEMEASASFLEDECYKKYGKTGKSFYYSQVASTVRWLTTASSTELMSRLCAINASTTKNVVSEAEQPLTSPPALEDTCAGDTSNEHSGNARSETSPCVVPIESSSFSTKLPQIPSFSEFVNSRKAKGDPLNDTKMHSSRVEKKMRIQ 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01364 1138 MobiDBLite consensus disorder prediction 1116 1138 - -
Cca08g01364 1138 Pfam RecQ zinc-binding 779 850 IPR032284 -
Cca08g01364 1138 SMART ultradead3 448 650 IPR014001 -
Cca08g01364 1138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 806 IPR001650 -
Cca08g01364 1138 PANTHER DNA HELICASE RECQ FAMILY MEMBER 417 1122 - -
Cca08g01364 1138 SMART helicmild6 685 766 IPR001650 -
Cca08g01364 1138 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 357 IPR011559 GO:0044249
Cca08g01364 1138 Gene3D - 642 868 IPR027417 -
Cca08g01364 1138 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 460 634 IPR014001 -
Cca08g01364 1138 Gene3D - 204 369 IPR042529 -
Cca08g01364 1138 Gene3D - 12 203 IPR027363 -
Cca08g01364 1138 Pfam Helicase conserved C-terminal domain 665 764 IPR001650 -
Cca08g01364 1138 Coils Coil 973 993 - -
Cca08g01364 1138 MobiDBLite consensus disorder prediction 1067 1087 - -
Cca08g01364 1138 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 359 IPR037171 -
Cca08g01364 1138 Pfam Initiation factor 2 subunit family 56 356 IPR000649 GO:0044237
Cca08g01364 1138 Pfam DEAD/DEAH box helicase 455 621 IPR011545 GO:0003676|GO:0005524
Cca08g01364 1138 Gene3D - 412 641 IPR027417 -
Cca08g01364 1138 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 442 853 IPR004589 GO:0004386|GO:0006310
Cca08g01364 1138 CDD SF2_C_RecQ 642 775 - -
Cca08g01364 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 787 IPR027417 -
Cca08g01364 1138 MobiDBLite consensus disorder prediction 1108 1138 - -
Cca08g01364 1138 CDD DEXHc_RecQ 441 641 - -
Cca08g01364 1138 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 15 357 IPR005251 -
Cca08g01364 1138 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 417 1122 - -
Cca08g01364 1138 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 366 IPR005251 -
Cca08g01364 1138 MobiDBLite consensus disorder prediction 1053 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01364 Cca-Chr8 41097251 41112076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01364 53 372 Eukaryotic Initiation Factors Gene Family AT2G05830 79.128 5.07e-166 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01364 - K10901 gmx:100819601 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01364 08 41097251 41112076 Cca08g01364 08 41097251 41112076 ECH