Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01360 aTGCAACTCCAACTCACACTCTCCACTCTCTTCCTCTTCTTTGTGCTGACATCCCCAACCGTTTCCACCTCGGCATCCCAGAGCAAGCCGCAGGATCTGGTCCGATCCTCGTGCGTGCACGCGCGGTACCCGAGGCTGTGCGTGCGCACGCTCTCTAACTTCGCGGGGCCCGCCAACACGCCGCTGGACCTGGCCCGGGCCGCGCTGCGGCGGTCGGCCCTGCGCGACTGCAAGGAGCAGATTAATGACTCCCTGGAGCAGCTGCAGAGGAGCCTGGAGGAGCTGCAGCACCTGCGGGCCGAGACCTTCCGGTGGCAGATGAGCAACGCCCAGACGTGGGTCAGCGCCGCCCTCACCGACGGCGACACCTGTCTCGATGGCTTCGACGGGAACGCCAGGCCCGACCTCAAGCGCAGGGTTACAGATGTCGCTAGAGTCACTAGCAATGCTTTGTACATGATCAATCGCCTCGGTCAAACTGGGAAGCCCAGGCCCAGGCCCAGGCCCAGCCCCAAGAATTGA 522 0.6398 MQLQLTLSTLFLFFVLTSPTVSTSASQSKPQDLVRSSCVHARYPRLCVRTLSNFAGPANTPLDLARAALRRSALRDCKEQINDSLEQLQRSLEELQHLRAETFRWQMSNAQTWVSAALTDGDTCLDGFDGNARPDLKRRVTDVARVTSNALYMINRLGQTGKPRPRPRPSPKN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01360 173 TIGRFAM PME_inhib: pectinesterase inhibitor domain 71 157 IPR006501 GO:0004857
Cca08g01360 173 Coils Coil 74 101 - -
Cca08g01360 173 CDD PMEI-like_3 36 157 - -
Cca08g01360 173 PANTHER PECTINESTERASE INHIBITOR-LIKE 71 160 - -
Cca08g01360 173 SMART PMEI_2 29 153 IPR006501 GO:0004857
Cca08g01360 173 PANTHER PECTINESTERASE INHIBITOR 3 71 160 - -
Cca08g01360 173 PANTHER PECTINESTERASE INHIBITOR 3 8 70 - -
Cca08g01360 173 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 70 - -
Cca08g01360 173 Pfam Plant invertase/pectin methylesterase inhibitor 32 152 IPR006501 GO:0004857
Cca08g01360 173 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 157 IPR035513 -
Cca08g01360 173 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 158 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01360 Cca-Chr8 40968793 40970006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01360 33 160 Carbohydrate Esterase AT3G14310 28.395 5.69e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01360 - - gmx:100816686 222.631