Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01358 ATGGAAGCCAAGTCCATGGCACTGCAATTTGTTCCTCTTCTGCTTCCTTTGCTTGCTGCTGCTGTTCATGGAGTCGCTTCCAATGCGACACTGAACGAGACTTGTGGATACTTCAATGGTTCTTTCAATAGAGACACTACAGTAACATGCCCAATTGGTTGGGTTATGGACCCTAACAAGACCAAGTGCTTTCTCCATGTTGGGAGGCTTCAATCTTGGAATGACTCAGAGACGTGTTGTAGTAAGTATGGTGGACATTTAGTGTCATTAACATCGCTTCAGGAGCTAAAATTTGCTCAGAGCCTATGTGGTGATTCTAAAAATAGTTGTTGGATTGGTGGACAAAAACTCAACTCTACATCTGGTTATCAGTGGATGTGGTCTGACAATTCACAGTGGAATAACTCCATATTATCTGTGGATGATGTTCCACCCCATTGTAATGGAACTGGACCAACCTGCAATACGAACAGTACAGACAATTTATGTACAGCAATGACTAATAATTCAAACTCTCTCATGAGTGAGAGATGTGACAATCTTCATGCTTCTCTATGTATACTTGATATAGATACAAAATGTAACCATATGCACTGCCACAGGGAATACCTAATCATCCTTGCAGTGGTGAGTGCCTTGATACTTTCCACAACATTAGCCGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAAAGAAGGCGGTCTAGAAAATTATATATTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAGGAGGAATTAAGGTCGATTACAAAGAATTTTAGTGAAGGTAACCGTCTTGTTGGGGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCTGATGGTTCAAAGGTTGCAGTTAAGAGATTAAAGAGGTCAAACTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCTAGGCTTCGTCATCCAAATCTGGTGGCTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCGACAACACTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTCAAACCACAGGTTGTGCACCGAGATATACGTGCTAGCAATGTACTGCTGGATGAGGAGTTTGGAGCACACCTCATGGGTGTTGGCCTATCCAAGTTTGTGCCATACGAGGTAATGCATGAGAGGACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACAGAAACGAGCTTACGACGAAGAGTGACGTGTATAGTTTTGGTGTCCTACTACTTGAAATAGTAAGTGGACGTAGACCTGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCAACACCTCTTGTGCAAGCTCATCGCTATCATGAACTCTTGGATCTTCATATAACTTCCTCCTCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCTTGCACACAGCACGTCCCTTCTATGCGCCCCAGAATGTCTCATGTTGTTCACCAGCTGCAACAGTTTTCCCAGCCACTTGCAAAGTAA 1659 0.4346 MEAKSMALQFVPLLLPLLAAAVHGVASNATLNETCGYFNGSFNRDTTVTCPIGWVMDPNKTKCFLHVGRLQSWNDSETCCSKYGGHLVSLTSLQELKFAQSLCGDSKNSCWIGGQKLNSTSGYQWMWSDNSQWNNSILSVDDVPPHCNGTGPTCNTNSTDNLCTAMTNNSNSLMSERCDNLHASLCILDIDTKCNHMHCHREYLIILAVVSALILSTTLAVVVWLLVYKRGKKRRRSRKLYIPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSKVAVKRLKRSNFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYHELLDLHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFSQPLAK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01358 552 Gene3D Transferase(Phosphotransferase) domain 1 342 549 - -
Cca08g01358 552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 548 - -
Cca08g01358 552 Gene3D Phosphorylase Kinase; domain 1 244 341 - -
Cca08g01358 552 SMART tyrkin_6 275 543 IPR020635 GO:0004713|GO:0006468
Cca08g01358 552 SUPERFAMILY Protein kinase-like (PK-like) 239 543 IPR011009 -
Cca08g01358 552 Pfam Lectin C-type domain 71 186 IPR001304 -
Cca08g01358 552 ProSitePatterns Tyrosine protein kinases specific active-site signature. 388 400 IPR008266 GO:0004672|GO:0006468
Cca08g01358 552 PANTHER - 1 548 - -
Cca08g01358 552 CDD CLECT 62 186 - -
Cca08g01358 552 ProSiteProfiles C-type lectin domain profile. 59 187 IPR001304 -
Cca08g01358 552 Pfam Protein tyrosine and serine/threonine kinase 275 543 IPR001245 GO:0004672|GO:0006468
Cca08g01358 552 Gene3D - 44 203 IPR016186 -
Cca08g01358 552 SUPERFAMILY C-type lectin-like 39 187 IPR016187 -
Cca08g01358 552 ProSiteProfiles Protein kinase domain profile. 266 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01358 552 SMART CLECT_2 50 187 IPR001304 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01358 Cca-Chr8 40924456 40932604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01358 80 550 Receptor kinase-like Gene Family AT1G52310 70.625 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Cca08g01358 PK_Tyr_Ser-Thr 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01358 - - gmx:100779497 987.638