LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01356	ATGGGGGCGAAGAAGCACGGTGAGGGTAACGGCACCAACAGTGATGTATTTGCTTCATGTTCCTTCTCTAGCCTTGGCCTTGATTCCAATTTATGTGACCAACTTCGCGAGAGGTTGGGATTTGAAGTTCCGACGCTGGTGCAAGCTCAAGCAATTCCTATTATTCTCTCGGGGCGTCATGCACTTGTAAATGCTGCCACGGGAACGGGGAAAACTGTTGCGTATTTGGCTCCAATCATTCATCACTTGCAGAGTTATGATAATCGGATTCAGCGCTCAGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGCGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGGTTTCATTGGATTGTTCCTGGATATATTATGGGAGGTGAAAATAGATCAAAGGAGAAAGCTAGGTTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCTTGTACTCAAACCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATAATCGATCTTTTAGGATCAAGGAAAACAAGGCATGATGACCAAGAGAATACTGTTCCAAGACACTCTAATATTCAAAGACAGAATTTACTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGGTAAGAAAATAGAACCAATTTCAACAATTGAAAGCCTTGATCCTTCAGAGTCTGATGAAGACAATGAAGACAAGTATTCCAGTAAAGTGCCAATAGTTGGAGATTACAATGTCCCCATACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTCTTTCAATTCTAAAGCATCTCTTTGAAAGGGAACCTTCTCAGAAGGTTGTTGTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCTTATCCAAAAACAGAAGAAGGGACCCGACAGATGTTTATTGGATCCAAAACTTTCCGGTTACATGGTAATATGGAACAGGAGGATCGGAGAACCAGTTTCCAGACCTTTAAAACCGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCTTGGATTTTCCGAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACAGAATATGTTCATAGAGTTGGTAGAACTGCTCGACTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAGTTGAAATTGACTACTTACAGGACTTGGAGAAACATGGTGTCTCACTCACCGAGTATCCTGCCCTCAAAATGTTGGATAGTTTTCCACTATATGGACAAAAGAACCTCGCAAAGAAGTCTGTTTTCATTGACTCACATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCGTCACATCCAAGCCCAAGATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGAGCATACACAGCCCATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAAATAAGAAGAGAAAGATACTTGAGAAGAAGAAAAATAGGTTGCCAAAAAGGAGAAAAGTTACGAGTGTGTGA	1773	0.4112	MGAKKHGEGNGTNSDVFASCSFSSLGLDSNLCDQLRERLGFEVPTLVQAQAIPIILSGRHALVNAATGTGKTVAYLAPIIHHLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYSNLRWIIFDEADRILELGFGKDIEEIIDLLGSRKTRHDDQENTVPRHSNIQRQNLLLSATLNEKVNHLAKISLDNPVMVGLDGKKIEPISTIESLDPSESDEDNEDKYSSKVPIVGDYNVPIQLIQRYMKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPKTEEGTRQMFIGSKTFRLHGNMEQEDRRTSFQTFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPALKMLDSFPLYGQKNLAKKSVFIDSHPWVLCLQKALEAFVTSKPKMDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKILEKKKNRLPKRRKVTSV	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01356	590	Pfam	Domain of unknown function (DUF4217)	498	558	IPR025313	-
	Cca08g01356	590	PANTHER	RNA HELICASE	10	585	-	-
	Cca08g01356	590	SMART	ultradead3	40	256	IPR014001	-
	Cca08g01356	590	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	170	450	IPR027417	-
	Cca08g01356	590	SMART	DUF4217_3	496	561	IPR025313	-
	Cca08g01356	590	Gene3D	-	304	586	IPR027417	-
	Cca08g01356	590	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	52	248	IPR014001	-
	Cca08g01356	590	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	20	49	IPR014014	GO:0003724
	Cca08g01356	590	PANTHER	ATP-DEPENDENT RNA HELICASE DDX31-RELATED	10	585	-	-
	Cca08g01356	590	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	308	481	IPR001650	-
	Cca08g01356	590	Pfam	DEAD/DEAH box helicase	46	236	IPR011545	GO:0003676\|GO:0005524
	Cca08g01356	590	Gene3D	-	4	251	IPR027417	-
	Cca08g01356	590	CDD	DEADc_DDX31	31	249	-	-
	Cca08g01356	590	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	176	184	IPR000629	-
	Cca08g01356	590	CDD	SF2_C_DEAD	293	443	-	-
	Cca08g01356	590	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	17	248	IPR027417	-
	Cca08g01356	590	SMART	helicmild6	336	434	IPR001650	-
	Cca08g01356	590	Pfam	Helicase conserved C-terminal domain	311	434	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01356	Cca-Chr8	40882874	40889141	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01356	21	465	Eukaryotic Initiation Factors Gene Family	AT3G19760	24.609	1.13e-32	128

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01356	K14806		-	gmx:100805157	1033.86