Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01355 ATGAAGGCTCCTCCCAATAGTTACTTGCCAAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTGCACGCTGACCCTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATATTGGCATCCGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCGGTGCCTCGTAGAGCGGCTGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCTCCAGCCCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGGCATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATCAGAGATGAAAAACAACAACTCCTTTTAGGTATAAAGAGAGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCAAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAATAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCTCTGTACAATCAAGTTTCCCTTGGAATGAGGTTCAGAATGATGTTTGAGACTGAGGAGTCAGGGGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCCGGTGGAAGAATTCGCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGGGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATATGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGATTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAACCTGGATTTATACCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTAACACTGATGATCCATCCAAACTATTGAGCTTTCAAGCTCCTGTTCTCTCTGCACCAAATCTTCAATTCAACAAACCAAATCTACCAAACCAAGTCAACCAGTTGCAACAATCGCCAACGTCATGGCCTCCACAACAGCAGCAACAGCAGAAACTGCAATCAATGTTGCAAACACCATTAAACcagctccagcaacagcagcagaggcaacagcagctgcctggaccacaaaacttgtcacaaccgcagcaacaacaaccccaactgcctcaacagagagcacaacagccacaacagcagcaacagcagTCGTGTCAACCGACCATCATGAACAATGGGGCAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACCTACTCTCAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCCCACCCCAACAAAGCTTTCAATCACCCAGTAAGAATACATTGCTGATGACATCCTTACCTCAAGACTCGCAGTTTCAGCAACAAATAGACCAGCAAGCTAGTCTCTTACAGAGgcagcagcagcagcagcagcaacagACACAGTTGCAACCTTCTCCGATGCAGTTATTGCAACAAAGCCTGTCACAAAGGGCACCACAACAATCCCAATTGACTCAAATGTCGCAGCAAAACAGCTCAGAACAACAACCACAGTTACAGTTGCTACAGAAATTgcagcaacagcagcagcagcaacaACTCCTTTCCACTTCTAGCCCACTTTTGCAATCTCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTGCCACAGCTGCCTCTGTCACAGTGTCATCAGCCTCAACAGCTAGGCAACAATGCTTTTTCAATGGAGAAGCTTCTCAATGGCAACAACTACTCTTCTTCGGCTTTGATGCAAACACAGCAGCTTCCTGTGACCCAACACCATAACACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACATCACCATCTACTAATAACTGCCAGATATCTCCTCCAAATCTGATGAAAAGAAATCAACCGGTACCAACCACATTAGGAGGACCTTCGGTAGTGGAACCCACCAATCATCTGATACAGGAGCTTCATAGTAAGTCTGAGATGCAGATCAAACATGAATTACCCAGTGTAAGAGGACCTGACCAGCTCAAGTATAAAGGGACAATTGCTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCCACAGAACTTCTCACTTCCCAACTTCTGCATGGATGGAGATGTCCAATCACACCCAAGAAACAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATTTTCAAAACTTACTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGATATGCCTTTTAAGCCTGGATGCTCTAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAACCAGACTCAACGTATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTCGGAAGATGTATCGATGTCACCCGTTACAAAGGATACAATGAACTCCGGCATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGACCCTCAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAACGACATTCTTCTGGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGACAACTCCGCCGCGTCGTTTAATCGATAA 3357 0.4179 MKAPPNSYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQPGFIPPSMLSSNTLHGNLNTDDPSKLLSFQAPVLSAPNLQFNKPNLPNQVNQLQQSPTSWPPQQQQQQKLQSMLQTPLNQLQQQQQRQQQLPGPQNLSQPQQQQPQLPQQRAQQPQQQQQQSCQPTIMNNGAVASNQIPNQCVQQPVTYSQLQQQQLLSGSIPPQQSFQSPSKNTLLMTSLPQDSQFQQQIDQQASLLQRQQQQQQQQTQLQPSPMQLLQQSLSQRAPQQSQLTQMSQQNSSEQQPQLQLLQKLQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLLNGNNYSSSALMQTQQLPVTQHHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPPNLMKRNQPVPTTLGGPSVVEPTNHLIQELHSKSEMQIKHELPSVRGPDQLKYKGTIADQLEASSGTSYCIDPNNIPQNFSLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDFQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYNELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01355 1118 ProSiteProfiles PB1 domain profile. 991 1084 IPR000270 GO:0005515
Cca08g01355 1118 PANTHER AUXIN RESPONSE FACTOR 19 1 1106 - -
Cca08g01355 1118 MobiDBLite consensus disorder prediction 637 679 - -
Cca08g01355 1118 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cca08g01355 1118 Gene3D - 986 1080 - -
Cca08g01355 1118 MobiDBLite consensus disorder prediction 470 555 - -
Cca08g01355 1118 Pfam AUX/IAA family 988 1077 IPR033389 -
Cca08g01355 1118 CDD B3_DNA 125 217 IPR003340 GO:0003677
Cca08g01355 1118 MobiDBLite consensus disorder prediction 1096 1118 - -
Cca08g01355 1118 MobiDBLite consensus disorder prediction 764 810 - -
Cca08g01355 1118 SUPERFAMILY CAD & PB1 domains 1005 1069 - -
Cca08g01355 1118 SMART B3_2 126 228 IPR003340 GO:0003677
Cca08g01355 1118 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca08g01355 1118 Gene3D - 123 227 IPR015300 -
Cca08g01355 1118 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Cca08g01355 1118 Gene3D - 289 360 - -
Cca08g01355 1118 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1106 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca08g01355 1118 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01355 Cca-Chr8 40815224 40824562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01355 1 488 B3 DNA Binding Superfamily AT1G19220 83.640 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca08g01355 AUX_IAA 2.8e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01355 K14486 - gmx:100804628 991.104