LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01355	ATGAAGGCTCCTCCCAATAGTTACTTGCCAAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTGCACGCTGACCCTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATATTGGCATCCGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCGGTGCCTCGTAGAGCGGCTGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCTCCAGCCCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGGCATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATCAGAGATGAAAAACAACAACTCCTTTTAGGTATAAAGAGAGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCAAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAATAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCTCTGTACAATCAAGTTTCCCTTGGAATGAGGTTCAGAATGATGTTTGAGACTGAGGAGTCAGGGGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCCGGTGGAAGAATTCGCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGCAGGGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATATGTCCTCCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGATTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAACCTGGATTTATACCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTAACACTGATGATCCATCCAAACTATTGAGCTTTCAAGCTCCTGTTCTCTCTGCACCAAATCTTCAATTCAACAAACCAAATCTACCAAACCAAGTCAACCAGTTGCAACAATCGCCAACGTCATGGCCTCCACAACAGCAGCAACAGCAGAAACTGCAATCAATGTTGCAAACACCATTAAACcagctccagcaacagcagcagaggcaacagcagctgcctggaccacaaaacttgtcacaaccgcagcaacaacaaccccaactgcctcaacagagagcacaacagccacaacagcagcaacagcagTCGTGTCAACCGACCATCATGAACAATGGGGCAGTTGCTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACCTACTCTCAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCCCACCCCAACAAAGCTTTCAATCACCCAGTAAGAATACATTGCTGATGACATCCTTACCTCAAGACTCGCAGTTTCAGCAACAAATAGACCAGCAAGCTAGTCTCTTACAGAGgcagcagcagcagcagcagcaacagACACAGTTGCAACCTTCTCCGATGCAGTTATTGCAACAAAGCCTGTCACAAAGGGCACCACAACAATCCCAATTGACTCAAATGTCGCAGCAAAACAGCTCAGAACAACAACCACAGTTACAGTTGCTACAGAAATTgcagcaacagcagcagcagcaacaACTCCTTTCCACTTCTAGCCCACTTTTGCAATCTCAGCTTCTACAGCAACAAAATACTCATCAACAAAACCAGCAATTGCCACAGCTGCCTCTGTCACAGTGTCATCAGCCTCAACAGCTAGGCAACAATGCTTTTTCAATGGAGAAGCTTCTCAATGGCAACAACTACTCTTCTTCGGCTTTGATGCAAACACAGCAGCTTCCTGTGACCCAACACCATAACACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACATCACCATCTACTAATAACTGCCAGATATCTCCTCCAAATCTGATGAAAAGAAATCAACCGGTACCAACCACATTAGGAGGACCTTCGGTAGTGGAACCCACCAATCATCTGATACAGGAGCTTCATAGTAAGTCTGAGATGCAGATCAAACATGAATTACCCAGTGTAAGAGGACCTGACCAGCTCAAGTATAAAGGGACAATTGCTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCCACAGAACTTCTCACTTCCCAACTTCTGCATGGATGGAGATGTCCAATCACACCCAAGAAACAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATTTTCAAAACTTACTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGATATGCCTTTTAAGCCTGGATGCTCTAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAACCAGACTCAACGTATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTCGGAAGATGTATCGATGTCACCCGTTACAAAGGATACAATGAACTCCGGCATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGACCCTCAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAACGACATTCTTCTGGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGACAACTCCGCCGCGTCGTTTAATCGATAA	3357	0.4179	MKAPPNSYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQPGFIPPSMLSSNTLHGNLNTDDPSKLLSFQAPVLSAPNLQFNKPNLPNQVNQLQQSPTSWPPQQQQQQKLQSMLQTPLNQLQQQQQRQQQLPGPQNLSQPQQQQPQLPQQRAQQPQQQQQQSCQPTIMNNGAVASNQIPNQCVQQPVTYSQLQQQQLLSGSIPPQQSFQSPSKNTLLMTSLPQDSQFQQQIDQQASLLQRQQQQQQQQTQLQPSPMQLLQQSLSQRAPQQSQLTQMSQQNSSEQQPQLQLLQKLQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLLNGNNYSSSALMQTQQLPVTQHHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPPNLMKRNQPVPTTLGGPSVVEPTNHLIQELHSKSEMQIKHELPSVRGPDQLKYKGTIADQLEASSGTSYCIDPNNIPQNFSLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDFQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYNELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR	1118

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01355	1118	ProSiteProfiles	PB1 domain profile.	991	1084	IPR000270	GO:0005515
	Cca08g01355	1118	PANTHER	AUXIN RESPONSE FACTOR 19	1	1106	-	-
	Cca08g01355	1118	MobiDBLite	consensus disorder prediction	637	679	-	-
	Cca08g01355	1118	SUPERFAMILY	DNA-binding pseudobarrel domain	116	255	IPR015300	-
	Cca08g01355	1118	Gene3D	-	986	1080	-	-
	Cca08g01355	1118	MobiDBLite	consensus disorder prediction	470	555	-	-
	Cca08g01355	1118	Pfam	AUX/IAA family	988	1077	IPR033389	-
	Cca08g01355	1118	CDD	B3_DNA	125	217	IPR003340	GO:0003677
	Cca08g01355	1118	MobiDBLite	consensus disorder prediction	1096	1118	-	-
	Cca08g01355	1118	MobiDBLite	consensus disorder prediction	764	810	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01355	Cca-Chr8	40815224	40824562	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01355	1	488	B3 DNA Binding Superfamily	AT1G19220	83.640	0.0	840

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Cca08g01355		AUX_IAA	2.8e-09	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01355	K14486		-	gmx:100804628	991.104

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