Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01354 atggggacagCCAAGAAACAAGAATTGGTAACAGGGCCAGTGGGGCGCGTGACTGACACTGACACTATCCATCTTCTGCTGAAACTAGTTGGTTCTAGAAGGGTCCATTATCATCACATAAAACCCCCATCTCTACTTAGGGTTTTGTTATCTTCATCCTTTCATCTTTCAACGCTACTTCCAACCTCTCTTCTTCGCAAGTCTAACCTCCAATCAATGGCCACCGCTCAGCTCACAGCACTCGCCTCCTCTGTCTCTACGCCGTCGTTTGAAGCCCTTCGACCCTCCCTGCTTCACTTTCCCTCCGCTCGCCGCGTCACCATCGGAAACCTCTCGCGAAAGCCCTTTCGGCCTTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAGTACACTGCGATTAAGCCTCTGGGTGACAGAGTGTTGATAAAAATTAAGGAAGCAGAGGAGAAAACTGTGGGTGGGATTTTGCTTCCCTCAACTGCTCAGACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGGGAAGGAAAGACAGTTGGGAAGACCAATGTGGCTATCAGTGTGCAGACTGGTGCACAAGTCGTGTATTCAAAGTATGCAGGCACTGAGGTGGAATATGACGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAGCCTTTGAATGATAGAGTCCTCATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTTACGGAGGCAACAAAAGAGAAGCCTTCTATTGGAACAGTGATAGCAGTCGGTCCTGGGCCTCATGACGAGGAAGGTAACAGAAAACCTTTGTCCGTGAGTCCTGGAAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGAAAAGATGGGGACTATATTACCTTGAGGGTCTCAGATGTCATGGCTGTCCTCTCCTAG 975 0.4779 MGTAKKQELVTGPVGRVTDTDTIHLLLKLVGSRRVHYHHIKPPSLLRVLLSSSFHLSTLLPTSLLRKSNLQSMATAQLTALASSVSTPSFEALRPSLLHFPSARRVTIGNLSRKPFRPLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTVGGILLPSTAQTKPQGGEVVAVGEGKTVGKTNVAISVQTGAQVVYSKYAGTEVEYDGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPHDEEGNRKPLSVSPGNTVLYSKYAGNDFKGKDGDYITLRVSDVMAVLS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01354 324 Gene3D GroES chaperonin 227 324 IPR037124 GO:0006457
Cca08g01354 324 Gene3D GroES chaperonin 126 226 IPR037124 GO:0006457
Cca08g01354 324 PRINTS 10kDa chaperonin signature 134 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 PRINTS 10kDa chaperonin signature 211 224 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 PRINTS 10kDa chaperonin signature 156 177 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 PRINTS 10kDa chaperonin signature 190 202 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 Hamap Co-chaperonin GroES [groES]. 133 225 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 SMART Cpn10_2 133 224 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 SMART Cpn10_2 231 323 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 ProSitePatterns Chaperonins cpn10 signature. 134 158 IPR018369 GO:0005524|GO:0006457
Cca08g01354 324 Hamap Co-chaperonin GroES [groES]. 231 324 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 CDD cpn10 134 224 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 ProSitePatterns Chaperonins cpn10 signature. 232 256 IPR018369 GO:0005524|GO:0006457
Cca08g01354 324 PANTHER GROES CHAPERONIN 73 324 - -
Cca08g01354 324 SUPERFAMILY GroES-like 230 323 IPR011032 -
Cca08g01354 324 CDD cpn10 232 323 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 PANTHER 10 KDA HEAT SHOCK PROTEIN 73 324 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 SUPERFAMILY GroES-like 132 225 IPR011032 -
Cca08g01354 324 Pfam Chaperonin 10 Kd subunit 232 322 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cca08g01354 324 Pfam Chaperonin 10 Kd subunit 134 223 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01354 Cca-Chr8 40810142 40814719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01354 73 324 Calmodulin-binding Proteins AT5G20720 73.438 4.24e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01354 K04078 - gmx:100803033 427.943