Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01353 ATGGTGAAGCCCACCGCGGAAAAACAAACGGCCGAGCAGAACGATACGACGTCGTACAGGGGAGTACGGAAGAGGAAGTGGGGAAAATACGTGTCGGAAATTAGGCTGCCCAACAGCCGTAAGAGGATTTGGTTGGGTTCCTACGACACCGCCGAGAAGGCGGCGCGTGCCTTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGCGCTAGGTTTAATTTCCCCTCCGACCCCCCCGACATCGCCGGCGGGAGGACCATGACGCCCTCCCAGATTCAGATCGCCGCCGCACGCTTCGCCAATTCGGAGCCCCGAAAGGAGTGTTCGGGTCGACCCGTGGAGTCCTTGACTTCGGATGAGGACAGTCAGGAAACGACGTCGTTGCCTTTGGACACCTCGTCTCCTCCTCTCTCCGACGTCACAGTCCAAAACGACACCGAATTACTACACGGGTATCTCCCGGATCCCTTTTCGGATCTCGGGTCGGATAATTTCCAACCCGATTTTTCCTTTTTCCCGGGCTTCGATGATTTTAGTAGCGATTTTCTTTTTCCGGAGATTCCGAGTTTCGATTACGGAGAGGAGAATTTGGAGGGGTTGATAATTCAGGACTCGTTTTTGTGGAATTTCTAA 633 0.5482 MVKPTAEKQTAEQNDTTSYRGVRKRKWGKYVSEIRLPNSRKRIWLGSYDTAEKAARAFDAAMFCLRGSGARFNFPSDPPDIAGGRTMTPSQIQIAAARFANSEPRKECSGRPVESLTSDEDSQETTSLPLDTSSPPLSDVTVQNDTELLHGYLPDPFSDLGSDNFQPDFSFFPGFDDFSSDFLFPEIPSFDYGEENLEGLIIQDSFLWNF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01353 210 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Cca08g01353 210 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Cca08g01353 210 CDD AP2 19 75 IPR001471 GO:0003700|GO:0006355
Cca08g01353 210 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Cca08g01353 210 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Cca08g01353 210 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Cca08g01353 210 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Cca08g01353 210 MobiDBLite consensus disorder prediction 104 118 - -
Cca08g01353 210 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 210 - -
Cca08g01353 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 210 - -
Cca08g01353 210 MobiDBLite consensus disorder prediction 119 140 - -
Cca08g01353 210 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Cca08g01353 210 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g01353 210 MobiDBLite consensus disorder prediction 100 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01353 Cca-Chr8 40749014 40750315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01353 17 210 AP2-EREBP Transcription Factor Family AT1G19210 49.749 1.14e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g01353 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01353 - - gmx:100802508 290.426