Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01350 ATGTCCACTTCATCGGAGTACTCTGAGTTTTCCGGCAACAAACCGGCCAGGTCGCCGGAGAAGTCCACTTTCTCTCAGAAGTGCAGTTTGTTGAGTCAATATATCAAAGAGAAGGGTAGCTTTGGAGATCTTACCCTTGGCATGACATGCAAACCCGAACCATGTGGGTCTTCTGAGACATCATGTCAATCTGCTACAACCATGAACTTGTTTCCGACCAAGGAAAACAACGTGACACCAAACAACCTGACAGCTATGGATTTACTCTCTCCACAAACCTTTCGTCCTGCGGAGGAGATTCCAACCTTGGTTAATTCCAGTGCAATTAAATGTATGGGCAAGGGGGCTAAGAGTGCACAGATGACAATCTTTTATGGTGGACAAGTAGTTGTGTTTGATGATTTTCCTGCTGACAAGGCAAGTGAGATCATGTCCTATGCCAGCAAAGGGGTACCCCAAAGCCAGAACAATTCTGTTTACACCTACACACAGAGCCAGCCTTCATTTCCTCCTACCCTAGTCAGAACTTGTGCTGATTCAAGTGCTCCAATTATTCCCAGTGTGAACATTGCTGCTACCAACAACATTCATGAACACCCTCAAGCACCATCTAGACCTGTTGTTTGTGAACTGCCAATTGCTAGAAAAGCTTCACTTCATCGGTTTCTGGAGAAGAGAAAGGACAGGTAG 690 0.4565 MSTSSEYSEFSGNKPARSPEKSTFSQKCSLLSQYIKEKGSFGDLTLGMTCKPEPCGSSETSCQSATTMNLFPTKENNVTPNNLTAMDLLSPQTFRPAEEIPTLVNSSAIKCMGKGAKSAQMTIFYGGQVVVFDDFPADKASEIMSYASKGVPQSQNNSVYTYTQSQPSFPPTLVRTCADSSAPIIPSVNIAATNNIHEHPQAPSRPVVCELPIARKASLHRFLEKRKDR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01350 229 PANTHER PROTEIN TIFY 10A-LIKE 16 229 - -
Cca08g01350 229 ProSiteProfiles Tify domain profile. 114 149 IPR010399 -
Cca08g01350 229 SMART tify_2 114 149 IPR010399 -
Cca08g01350 229 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 229 IPR040390 -
Cca08g01350 229 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g01350 229 Pfam tify domain 117 148 IPR010399 -
Cca08g01350 229 Pfam Jas motif 212 229 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01350 Cca-Chr8 40675425 40678372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01350 2 229 Tify Gene Family AT1G74950 40.650 1.17e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca08g01350 tify 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01350 K13464 - gmx:100801449 373.244