Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01346 ATGGCTTTAGCACTTTCCTCCACCTCATTGTCAACTCTTCCAAACAGAGAAATACGTCACAGGGTTTTCCCCGAAAGAACTCCCACATGCTTGAGTTTGACCAGAAGAACCCTTACAAATGCCACAAAAGGAGTGTCTTCTGTCTGTGAGCCACTTCCTCCGGATAGACCCTTGTGGTTCCCTGGTAGTTCACCTCCTGAGTGGCTTGATGGCAGTCTTCCCGGTGATTTCGGTTTTGACCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTAAAGTGGTTTGCTCAAGCAGAGCTAATGCATGCAAGATGGGCAATGCTTGCGGTGTTTGGGATTCTCGTTCCGGAATTGCTTGAAAAGATTGGTTATGTTGAGAATTTCAATTGGTACGATGCTGGTGCGCGAGAGTATTTCACAGACCCTACTACCCTGTTCGTTGTGCAGATGGGCCTCATGGGCTGGGTGGAGGGTCGGAGATGGGCCGATATGGTTAACCCAGGGAGTGTTGACATTCAGCCCAAACTGCCACACCTTACCAACCCAAAGCCCGATGTTGGCTACCCCGGTGGGCTTTGGTTTGACCCAATGATGTGGGGGCGTGGGTCGCCCGAGCCAGTGATGGTGTTGAGGACCAAGGAGATCAAGAATGGTCGACTTGCAATGCTGGCTTTTGTTGGCTTCTGGTTCCAAGCTATTTACACTGGGGAAGGACCCATTGAAAATTTGATGGCACACATTGCTGATCCTGGTCACTGCAACATTTTCTCGGCTTTTACGTCGCGGTAG 786 0.5038 MALALSSTSLSTLPNREIRHRVFPERTPTCLSLTRRTLTNATKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEKIGYVENFNWYDAGAREYFTDPTTLFVVQMGLMGWVEGRRWADMVNPGSVDIQPKLPHLTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHIADPGHCNIFSAFTSR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01346 261 Gene3D Chlorophyll a/b binding protein domain 66 251 - -
Cca08g01346 261 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 258 IPR001344 GO:0009765|GO:0016020
Cca08g01346 261 SUPERFAMILY Chlorophyll a-b binding protein 55 260 - -
Cca08g01346 261 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Cca08g01346 261 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01346 Cca-Chr8 40509108 40511532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01346 54 261 Chloroplast and Mitochondria Gene Families AT3G61470 67.308 2.36e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01346 K08908 - gmx:100812066 518.464