Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01345 ATGGCCGCTGTTCGCGTCCTCTTCTGCTTCCTCTTGTTGGTTTTGTTCTCCCTCTCTTCCGCCAGCGAAACCCAATCCCTCCTCCGCCTCAAGCAGTCCCTCACCAACGCCGACACCGCCCTCTCCTCCTGGATCCCCAACGTCTCCCCCTGCTCCGGCACATGGACCGGCGTCGTCTGCTTCAACAACGTCGTAACGGGTCTCCACCTCTCCCACCTGGGCCTCTCCGGCCCAATCGACGTCCAAGCCCTCTCCGAGATCCAGGGCCTCCGCACCCTCAGCTTCGTCAACAACTCCTTCACCGGCCCAATCCCCGAGTTCCACAAACTCGGCGCCATCAAGTCCCTCCTCCTAACCCAAAACCAATTCTCCGGCCCCATCCACTCCGACTACTTCAACTCATTAAACTCCCTCAAGAAAATATGGCTCTCCGCAAACAACTTCTCCGGCGAGATCCCCCATTCCCTAACCGAACTCGACCTCCTCAAAGAGCTCCACCTCGAAAACAACGCCTTCACGGGCCCAGTCCCCAACTTCCCGCAGGACCTCAAATCGTTGGACCTCTCCAATAACAACCTCCAAGGCCCAATCCCGGGGAGCCTCGCCAAATTCAACGCCGCCTCGTTCGTGGGAAACGCGGCCCTCTGCGGGAAGCCGTTAGACAAACCCTGCGACGCTTCCTCTTCCTATCCGCTCCCGGGGAGAGCGAACGCCGCCGAGGACGGCTACGGCTACGGCTCCGGCTGGGCGAAGAAGGTCATCATTGTGCTGCTGGTGGCGGTGGTCGCCGCGGTGCTGTTTCTTTTCACCACGTCGCGGCGGCGGAGGGAGGACGGGGATTTCCGCGCGGTgagaaggagcagcagcgcggaggaggtggtggaggtgcaggtgccgagcgtgagaggggagaggaagggggagCCTCCGAAGAGGGCGGACATCGTGATGGTGAACGACGAGAGGGGCGTGTTCGGGTTACAGGATCTGATGAAGGCGGCGGCGGAGGTGCTCGGGAACGGTGGCCTGGGGTCGGCGTACAAGGCGGCGATGACGAGTGGGTTGTGCGTGGTGGTGAAGAGGATGAGGGAGATGAATAAGATCGGGAAGGACGTGTTTGACGCTGAGATGAGGCAGTTTGGGAGGATACGACACCGTAACGTGCTCACGCCTCTCGCTTACCATTACCGCAGGGAGGAGAAGCTCATCATCGCCGAGTACATGCCCAAAGGAAGCTTGTTCTACGTCCTGCATGGTGATAGAGGAACATCTCATTCCGAACTCAACTGGCCTACCCGTTTGAAGATAGTTAAGGGAATTGCAAGAGGCTTGGGCTTCCTCTACACTGAATTTTCCACCTACGACCTGCCTCATGGGAACCTCAAGTCTAGCAATGTTCTACTAAGCGAGGATTACGAGCCTCTCTTGAGTGACTACGCCTTTCAACCACTAATCAACCCTAGCGTTGCTGTGCAGACATTGTTTGCCTTCAAATCCCCGGATTATGTGCAAAACCAGAAGGTTTCACAGAAGACTGATGTCTATTGCCTTGGAATCATCATTCTCGAAATCGTCACGGGGAAGTTCCCTGCTCAATATCACAGCAACGGCAAGGGTGGCACCGATGTTGTGCAAATGGTCTCCACTGCAATTTCTGAGAATAGAGAAGCTGAGGTGATTGATCCCGAGTTGGAAAACAACACAAGTTCGCGCAAGAACATGCTGCAACTTCTCCATATTGGGGCTGATTGCACCCAAAGCGACCCCGGAGAAAGACTAAAAATGAAGGAAGCTATTACAAGGATAGAGGAGGTACGGGTTTAA 1824 0.5373 MAAVRVLFCFLLLVLFSLSSASETQSLLRLKQSLTNADTALSSWIPNVSPCSGTWTGVVCFNNVVTGLHLSHLGLSGPIDVQALSEIQGLRTLSFVNNSFTGPIPEFHKLGAIKSLLLTQNQFSGPIHSDYFNSLNSLKKIWLSANNFSGEIPHSLTELDLLKELHLENNAFTGPVPNFPQDLKSLDLSNNNLQGPIPGSLAKFNAASFVGNAALCGKPLDKPCDASSSYPLPGRANAAEDGYGYGSGWAKKVIIVLLVAVVAAVLFLFTTSRRRREDGDFRAVRRSSSAEEVVEVQVPSVRGERKGEPPKRADIVMVNDERGVFGLQDLMKAAAEVLGNGGLGSAYKAAMTSGLCVVVKRMREMNKIGKDVFDAEMRQFGRIRHRNVLTPLAYHYRREEKLIIAEYMPKGSLFYVLHGDRGTSHSELNWPTRLKIVKGIARGLGFLYTEFSTYDLPHGNLKSSNVLLSEDYEPLLSDYAFQPLINPSVAVQTLFAFKSPDYVQNQKVSQKTDVYCLGIIILEIVTGKFPAQYHSNGKGGTDVVQMVSTAISENREAEVIDPELENNTSSRKNMLQLLHIGADCTQSDPGERLKMKEAITRIEEVRV 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01345 607 Gene3D Phosphorylase Kinase; domain 1 302 407 - -
Cca08g01345 607 Pfam Protein kinase domain 336 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01345 607 Gene3D Ribonuclease Inhibitor 181 226 IPR032675 -
Cca08g01345 607 SUPERFAMILY L domain-like 21 204 - -
Cca08g01345 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 607 - -
Cca08g01345 607 PANTHER LRR RECEPTOR-LIKE KINASE 5 607 - -
Cca08g01345 607 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Cca08g01345 607 SUPERFAMILY Protein kinase-like (PK-like) 336 602 IPR011009 -
Cca08g01345 607 Pfam Leucine Rich Repeat 183 203 IPR001611 GO:0005515
Cca08g01345 607 Gene3D Ribonuclease Inhibitor 21 180 IPR032675 -
Cca08g01345 607 ProSiteProfiles Protein kinase domain profile. 332 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01345 607 Gene3D Transferase(Phosphotransferase) domain 1 408 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01345 Cca-Chr8 40506195 40509042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01345 1 605 Receptor kinase-like Gene Family AT3G42880 49.766 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca08g01345 Pkinase 4.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01345 - - vun:114162805 832.787