Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01342 ATGTCAATAAGGGGTAACAATTTGGGGGAGGGGGTTGGTGGCATGGTTCTCTTAGAGCTCCTAGAATGGGATTTGTTATTGCTACGAGTCAACAGTCAAAGGCATGATGGCTCCTTTGATTCGAAAACTTCCTTCAATTCAAGCTTCTTCATTCGGTTCTTCCTCTCCAAAGAAGAGATCCTACGCAAGGTGAAGCCAAGGAGGAATTTCATCAATCATTTCTCCTACCTCCACCATCATGAGACAAAGGTTGAACAAGTCTTTGTGGTTGGAAATACTGGCAAGAAGTTTGAGATAATTCTTGTTAAGGATATTAAATGTGCAAATATATTGGTGGATGCAAGTGGATCATTCAAGCTTGCAGATTTTGGATTGGCGAAGGCAACCAAATTGAATGATGTTAAATCAATGAAGGGGACAACATACTGGATGGCTCCTGAGagcgacttcacctccatGATGCTCACCCGGACGCACGAGCGCGGTTGCTGCTTGACCTACGACTACGTCATCGACGACGCCACTGATCTGCTCGTTGTACCACCTTTAACAGTTAAGGTTTCCCGTGCTTTTAGTACAGGTGCAAAAGATTATGCTATTATTGACAGCAAGGAACTCCAATATGACCAAGAAAGTGGATTTCATTTCTTGGATGCTTTTCCAAAGAATGTGGATGTGGGAACATATGTGTTTGTTTTTGAGATTGTGCTTCATGATTGTGGCAGTGAAAATGTTTATGCAATCGGAGGCCAAATTCATGTACCAATTTTTGTCACTGGAATTATTGAAGTTGGCAATGCAGAAATATCAGTTCTAAACAGTAATATTGGAAGTAATGAAACCCAGAAAAAGCTAGATTTGGCTGGAAATGACGTTGTTTCACTCTCAACTAATCACCTATTGCTTGCTTGTTTCTTCTGCATGCATTTCTACATTAATGTCTGCAGTAGAATCTGCTTCACTAAACCATACAACTTTACTTTCTATTGTGGCCTCTTTGTTCTATTAGATTTGTGA 1017 0.3982 MSIRGNNLGEGVGGMVLLELLEWDLLLLRVNSQRHDGSFDSKTSFNSSFFIRFFLSKEEILRKVKPRRNFINHFSYLHHHETKVEQVFVVGNTGKKFEIILVKDIKCANILVDASGSFKLADFGLAKATKLNDVKSMKGTTYWMAPESDFTSMMLTRTHERGCCLTYDYVIDDATDLLVVPPLTVKVSRAFSTGAKDYAIIDSKELQYDQESGFHFLDAFPKNVDVGTYVFVFEIVLHDCGSENVYAIGGQIHVPIFVTGIIEVGNAEISVLNSNIGSNETQKKLDLAGNDVVSLSTNHLLLACFFCMHFYINVCSRICFTKPYNFTFYCGLFVLLDL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01342 338 ProSiteProfiles Protein kinase domain profile. 1 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01342 338 Gene3D Transferase(Phosphotransferase) domain 1 67 163 - -
Cca08g01342 338 SUPERFAMILY Protein kinase-like (PK-like) 103 150 IPR011009 -
Cca08g01342 338 PANTHER RIBOPHORIN II 180 300 IPR008814 GO:0006487|GO:0008250|GO:0016021
Cca08g01342 338 Pfam Protein kinase domain 100 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01342 338 PANTHER RIBOPHORIN II 72 101 IPR008814 GO:0006487|GO:0008250|GO:0016021
Cca08g01342 338 Pfam Oligosaccharyltransferase subunit Ribophorin II 181 300 IPR008814 GO:0006487|GO:0008250|GO:0016021
Cca08g01342 338 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 72 101 - -
Cca08g01342 338 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 180 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01342 Cca-Chr8 40428626 40435128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01342 103 147 MAP Kinase Kinase Kinase AT4G08500 75.556 1.13e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca08g01342 Ribophorin_II 4.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01342 K12667 - gmx:100814831 206.068