Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01337 ATGCCCTCTTATTTCAGTTTAACAATGGATAGTCGTGGAGGCTTTAAATTAACTGGAATCAGGCAGATCGTGAGACTGAAGGAAATGCTGCAGAAGTGGCAGAGCGTGACATTACGCTCAAAAGCTGCTTCCAACATCATTCCCAGTTCCGAAGACGAGACCACCAACGACGAGAGGACCATGTTGACGATGTCACCACTGATCAACAAAAGGGTGGTGAATGTTATGAGTTGCGAATCAGATGAAGAGAGTTGCCAAAGCCCCGAACCGCTTCCACCACCGGATGTTCCAAAGGGTTACTTGGCAGTGTATGTTGGACCTGAGCTCAGGAGGTTCATCATTCCCACGAGCTACCTCAGCCACCATTTGTTCAAAGTATTGCTGGAAAAGGCTGCAGAGGAGTTTGGGTTTGATCACAGTGGCGCACTCACGCTCCCTTGCGAGATTGAGACCTTCAAGTTCCTCCTCAAGTGCATGGAGAATGAGAAGAATGGTGAAAGTGCGCCTGGATGCTCGGGAACTGAGGAAGATATTGGATGGAAGAGGAGAAACAAGGGACTTGTAGAGGTTGAGATAGTTGGTGATAATGATGGGGATATGCCATGTGAAGTGGTGGTTGTTGTGACCAGTAACCGTGATGTTGTTGGAATGGAGTCATGGATTTATGATGAGTAA 675 0.4756 MPSYFSLTMDSRGGFKLTGIRQIVRLKEMLQKWQSVTLRSKAASNIIPSSEDETTNDERTMLTMSPLINKRVVNVMSCESDEESCQSPEPLPPPDVPKGYLAVYVGPELRRFIIPTSYLSHHLFKVLLEKAAEEFGFDHSGALTLPCEIETFKFLLKCMENEKNGESAPGCSGTEEDIGWKRRNKGLVEVEIVGDNDGDMPCEVVVVVTSNRDVVGMESWIYDE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01337 224 Pfam Auxin responsive protein 91 158 IPR003676 GO:0009733
Cca08g01337 224 PANTHER BNAA02G05090D PROTEIN 14 164 - -
Cca08g01337 224 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 14 164 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01337 Cca-Chr8 40287951 40297838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01337 9 176 Calmodulin-binding Proteins AT3G43120 63.529 7.10e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01337 K14488 - gmx:100527570 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01337 08 40287951 40297838 Cca08g01337 08 40287951 40297838 ECH
Cca11g02571 11 52908015 52909674 Cca08g01337 08 40287951 40297838 PCT