Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01328 ATGTTGAATCCCGAACCCCCACCGCCGATGAAACTAACGCCTCACCGCCACGAAACGACGTCGTCGTCTGCGCTGAAGAGGAAGAAGCACAGAACTCCCTTCGCACTTCCCCCATCCGCGGAAGTGGTCGACGTCGAATCATTCACGCCGATCTCCTTCCGAGGCACCACCAAGTCAAGCGCCATCTCCGTCGAGCATTACGACGCCGTTTCCACCCCCTCCCACGTCATCGATCTCACCGACACCGACGACGACGACGTTTGCATCCTCAACTTCAAGCCGCGAATCGCGAAGCTCCAGAAGGTCGAGGGAGAGTCTTCTTCCAACGCTGCTCCTTTCCTCTGCGAATTCTGCGTGGAAACCAAAGCCGCAAGCGACTCCTTCAGCATCCCCGGATGCTGCCACGTGTACTGCAATAACTGCGTGGCCCTGTACGTGGAATCGAAGCTGCAACAAAACATGGTCCACATCGGGTGCCCTGTGCCTGGGTGCAGGGGATTGCTGGAGGCGCATGATTGTCGCGCGATTCTCCCTTCGGGGGCCCTTGATCGGTGGGGGAAGGCGTTGTGCGAGGCTGTGATTTCAGCGGAAGAGAAGTTCTACTGTCCCTTCGCGGATTGCTCTGTGTTGTTGATTCGCGAGGGCGAAGACGGTGATATTAGGGAGTGCGAGTGTCCCAATTGTAGGAGGCTGTTCTGTGCCCTATGTAGGGTACCGTGGCATCATGAGATATCGTGCGAGGAGTTTCAGAACCTGAACGCCAACGAGAGAGAGATGGAGGATATAATGTTGATGAACCTCGCTAAGCAAATGCAGTGGAAGAGGTGCCCTAGTTGTAGGTTTTACGTCGCAAAATCCCAGGGCTGCATGTACATGAAATGCAGGTGTGGCAACGCTTTCTGTTACAGCTGTGGAGCTCCTTACGTAGGTTCCAACCATAATTGCAACTACTGTGCACGCTAA 963 0.5514 MLNPEPPPPMKLTPHRHETTSSSALKRKKHRTPFALPPSAEVVDVESFTPISFRGTTKSSAISVEHYDAVSTPSHVIDLTDTDDDDVCILNFKPRIAKLQKVEGESSSNAAPFLCEFCVETKAASDSFSIPGCCHVYCNNCVALYVESKLQQNMVHIGCPVPGCRGLLEAHDCRAILPSGALDRWGKALCEAVISAEEKFYCPFADCSVLLIREGEDGDIRECECPNCRRLFCALCRVPWHHEISCEEFQNLNANEREMEDIMLMNLAKQMQWKRCPSCRFYVAKSQGCMYMKCRCGNAFCYSCGAPYVGSNHNCNYCAR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01328 320 Pfam IBR domain, a half RING-finger domain 189 246 IPR002867 -
Cca08g01328 320 Pfam IBR domain, a half RING-finger domain 261 313 IPR002867 -
Cca08g01328 320 ProSitePatterns Zinc finger RING-type signature. 133 142 IPR017907 -
Cca08g01328 320 SUPERFAMILY RING/U-box 189 251 - -
Cca08g01328 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 197 IPR013083 -
Cca08g01328 320 ProSiteProfiles TRIAD supradomain profile. 111 320 IPR044066 -
Cca08g01328 320 SMART ibrneu5 183 246 IPR002867 -
Cca08g01328 320 SMART ibrneu5 257 318 IPR002867 -
Cca08g01328 320 MobiDBLite consensus disorder prediction 1 31 - -
Cca08g01328 320 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 59 319 - -
Cca08g01328 320 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 319 IPR031127 GO:0004842|GO:0016567
Cca08g01328 320 SUPERFAMILY RING/U-box 257 317 - -
Cca08g01328 320 Gene3D - 244 320 - -
Cca08g01328 320 ProSiteProfiles Zinc finger RING-type profile. 115 161 IPR001841 -
Cca08g01328 320 SUPERFAMILY RING/U-box 112 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01328 Cca-Chr8 39995511 39998000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01328 80 307 C3H Transcription Factor Family AT2G19610 31.120 9.63e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01328 K11975 - gmx:100803898 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01328 08 39995511 39998000 Cca08g01328 08 39995511 39998000 ECH