Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01327 ATGATGTTCCATTCTCAGGGTGTGTCAAGGCATTGTAGTCTCCTTGCTGTCCTGAGTGGTAAATCACGTGACATTAAACAAAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCAGCCTCCTTACCCCTTTCCGGAGCTTTCTTCCTCTGGCCGTCTTGAGGTCAAGGTATTGATAAAACCTACGGCTGATGAACTCGGTCAAGCTCTTGAACAACTGCAGCCAGATTTTGTTTACCTGCAAGGCCAGCGGCTAGAAGATAGGGAAGAAATTGGACCCCTTGTATGGGAAGATTTTGACCTGTCTGTCCCAGAAGCCTTGTGTGGATTGTTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCAGAGGCACTCCGAAATAAGGGAGTTCCATACACTATATATTGGAAAAATGATTTTTCAAAGTATGCGGCTTCACATTTTCGTCATTCTTTTTTCTCTGTGGCACAGAGTACATCGAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCTTTTAGATTATACTGTATACAAAACAATGTCTTACCTTCTAACAGTCAGAAGGGTCCTGGTAAGATTGGGCCCCAAATTCTTGGGGTTCCTCCCGACATTGATATTGCTTCAAGTGTAGCAGACTTGAAGGAAGAGGAAAGTTCACCTGAGACTATTTCTGCTGTAAAGATATATGATGATGACGTGAACATGAGATTTCTTGTTTGTGGAGTTCCCCGCACACTGGATGCTTGTTTGTTGGGGTCTTTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAATACGTGGATGCAAACTTCACAACAGGACAAGTGCTCCACCACCACCTCTCCAGGCAGGAACATTCTCACGTGGTGTAGTGACTATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAACTTGTCCAGGCATTTCCTAGTCATGAACAAAGTAAATCACCTTCCTCTGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCAAGTGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCACCCAATGTGTCATATCGCAGCCTTGTTATGTTGGGAATTGCTAGTATTCAAGGATTGCCAGTTGCATCTTTTAATAAAGATGATTCTGAACGTCTCCTTTTCTTTTGTACTAGGCAGGAGAAAGAAAACTGTTCTAGTGATCCTGCTTCCTTTGGGATTCCAAGTTGGCTGATGCCTCCACCACCCAGTCGAAAAAGATCTGAACCATGCTCTAGTACAAGGTCTATTAAGGCTAGTGCCCGGGGAATTGAAGATATTGGCTGTCATAGACAGAAATTAAATCTTGCTGCTATGAGACCAATCCCTCAGTCTCATAGACACAAGATTCTCCCTTTTTCTGGATTGTCTGAGGGTGCAAGATATGATGGAGACCATGGAAAATCAAATCAGCCACTTGCTCCTATTAAGCATAATGTTTCAGGCCATACCTCAGCTACAAATAGGAAATCTGTGTCCAACTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCTATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTTTGATTCTTCGGGGGCATAATCGTCTAATTCCGCCAGGTGGGCTTGCTGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGATCTGTTCAACTTGTACAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGCAATCACACTATGACAAATAGAATGACCGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCATGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTGCATGCGGTGAGTGGGCTCATTTTGGTTGTGATAGGCGGCAGGGCCTCGGCGCATTTAAGGACTACGCTAAAACAGATGGACTCGAGTACGTTTGTCCTCGCTGCAGCTCATTAAAGTTCAATAAGAAGCCTCGAAAAACTGCAAATGGTTATTAA 2256 0.4353 MMFHSQGVSRHCSLLAVLSGKSRDIKQKQKQSAASEDQPPYPFPELSSSGRLEVKVLIKPTADELGQALEQLQPDFVYLQGQRLEDREEIGPLVWEDFDLSVPEALCGLFSSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSQKGPGKIGPQILGVPPDIDIASSVADLKEEESSPETISAVKIYDDDVNMRFLVCGVPRTLDACLLGSLEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADACFNDQLLENHIKKELIEKSQLVQAFPSHEQSKSPSSEPRRSASVACGSSVFEVCMRVPAWASQVLRQLAPNVSYRSLVMLGIASIQGLPVASFNKDDSERLLFFCTRQEKENCSSDPASFGIPSWLMPPPPSRKRSEPCSSTRSIKASARGIEDIGCHRQKLNLAAMRPIPQSHRHKILPFSGLSEGARYDGDHGKSNQPLAPIKHNVSGHTSATNRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCHSSAAGDWVNCGACGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSSLKFNKKPRKTANGY 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01327 751 CDD PHD_ARID4_like 684 735 - -
Cca08g01327 751 Pfam ARID/BRIGHT DNA binding domain 577 674 IPR001606 GO:0003677
Cca08g01327 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 737 IPR013083 -
Cca08g01327 751 Gene3D - 575 679 IPR036431 GO:0003677
Cca08g01327 751 ProSiteProfiles ARID domain profile. 574 678 IPR001606 GO:0003677
Cca08g01327 751 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 751 - -
Cca08g01327 751 SUPERFAMILY FYVE/PHD zinc finger 677 742 IPR011011 -
Cca08g01327 751 CDD ARID 576 674 - -
Cca08g01327 751 MobiDBLite consensus disorder prediction 440 466 - -
Cca08g01327 751 SUPERFAMILY ARID-like 575 689 IPR036431 GO:0003677
Cca08g01327 751 MobiDBLite consensus disorder prediction 26 47 - -
Cca08g01327 751 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 751 IPR042293 -
Cca08g01327 751 SMART ARID_2 571 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01327 Cca-Chr8 39968419 39977753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01327 2 750 ARID Transcription Factor Family AT3G43240 66.356 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca08g01327 ARID 7.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01327 - - gmx:100775894 1407.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01327 08 39968419 39977753 Cca08g01327 08 39968419 39977753 ECH