Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01326 ATGGCTTCTTCTAATAATTCCCTTTCTTCTCTCAACGTCGTCGGATACACGCACACTCCACCCAACAACCACCTTTCTTCGCTATCACACGTCACTCTCATAACCGTAACGGTCCTCGccgtcgccgttaccgtttccctagccttctatttccttctccgttaccgtagccgcttccTCCGCCGTTCATCTCCGTCAATCGCGGAAGTCTTCTCCTCCGCCAATCGGATATCGCCGGAGACCGCTTCGTCTTCCGTCGCCGACTCTCTCCCGACGTTCGCCTTCTCTTCCGTCACgcggcacggcggcggcggaagcggcgacggcgactgcgccgTGTGTCTTTCGAAGTTCGAGCAGCACGACCTCCTCCGCCTGCTACCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCGCTCGAATCTCACGTGTCCGCTCTGCCGATCCGCCGTTGTTGGATCGGAATCCGACCTCGCGAAGGTTTTCCGGTCGTCCTCCGTCGCTGGCGGCGACAGCTTCCGGCTGGAGATAGGGAACATCAGCAGCAGCCGCCGCGGTGCGGCGACGTCCGCCGGCGGCGGAGAAACGCGCGGAAGATCCTATTCCGTTGGCGCGTTCGAGTATTTCATCGACGAGGAGGCTGAGGTTGCGTTCAGTTACGCTCACCGGAGAAGCGTTTCAGGCGAGAAAGACGACGGTGATCCGGCGGAGCCTCTGCCGAGCTTGGCTGGTGAGGTAGAGCGTGGTGGAAGTAGTAATAATGATAGCAATAGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAATAGTCGCCGAAGCGACGTCGTTGCGGGTGGAGATTACGATGTGGAAGCGAACCGTTTTGGGGATGAAATCGGTGAAGTTTTCCGATGGCTCTCGGGGGTTTAA 966 0.5104 MASSNNSLSSLNVVGYTHTPPNNHLSSLSHVTLITVTVLAVAVTVSLAFYFLLRYRSRFLRRSSPSIAEVFSSANRISPETASSSVADSLPTFAFSSVTRHGGGGSGDGDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLRSNLTCPLCRSAVVGSESDLAKVFRSSSVAGGDSFRLEIGNISSSRRGAATSAGGGETRGRSYSVGAFEYFIDEEAEVAFSYAHRRSVSGEKDDGDPAEPLPSLAGEVERGGSSNNDSNSWLKDYVDRLSNTMSFRSSGRFFTGNSRRSDVVAGGDYDVEANRFGDEIGEVFRWLSGV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01326 321 SUPERFAMILY RING/U-box 104 157 - -
Cca08g01326 321 SMART ring_2 111 152 IPR001841 -
Cca08g01326 321 MobiDBLite consensus disorder prediction 231 260 - -
Cca08g01326 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 309 - -
Cca08g01326 321 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Cca08g01326 321 CDD RING-H2_PA-TM-RING 111 153 - -
Cca08g01326 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 157 IPR013083 -
Cca08g01326 321 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 309 - -
Cca08g01326 321 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01326 Cca-Chr8 39956363 39957565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01326 39 161 Rapid Response to Elicitors AT2G35000 35.507 1.35e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01326 K10663 - gmx:100804962 406.757