Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01324 ATGGCGTTTCAGGACTTCGACGTCATCTCCGAGCGCCGCAAAAACCAGGCCAAACTAAAGATGAGGAAGAAGATCCTCATTAGTGTTGTCTCCGCCGTGCTCCTGGCATGCGTCATCGGCGCCGCCGCGTTTGTGGTGGTCCAAAGAACAGGCGCGAACACCAAGGACGGCGTTGCCATGAAACCAACCGGCACCCCACACGTGGACCAAAACTCGAGGCTTGTCGGAATGATTTGCGGCTCCGCTGAGTACAAGGACAAATGCGAAAACACGCTCAACGAGGCCTTGAAGAAGGACCCACAACTGGCGCAGCCAAAGGACCTTCTTCTGGTTACCATGGTTGTTGCGGAGAACGAGGTTAACAAAGCCTTCAACGAAACCTCCAAGATGAAGTTCGCGTCCGAGGAGGAAAAGGGCGCGTATGAAGATTGTAAGCAGTTGTTCGAAGATGCCAAGGAAGAGCTTGGATTTTCCATCAACCAAGTCGGTGAAATCGACTCTGATAAGCTTTCATCCAAGGCCCCTGACCTAAACAACTGGCTCAGTGCTGTCATGTCGTACCAACAAACCTGCATCGATGGGTTCCCCGAAGGGAACTTGAAGAACGAGTTCAGGAACGCGTTTAACGAGTCGAGGGAGCTTGTGAGTAACGCTCTTGCCGTGGTGTCGCAGGTTTCTTCGTTCTTTTCGATATTCAAAGGTGCTGGGAACTTTCACCTTCCGTGGGAGAGTGATAACAATGATGGtgcttctgcttctgcttctgctcctacttcagggcctgttgctgctcagccccgtggtgttggaattggtggtgtttttgctcctgctcctcgtgctgcttctggttctgctgctcctggctcggctccaaccccggttcctgATTGGGATGGCCCAATTCCTACATGGGCCGTGCCCGTTCCTGCTTGGTCCGGCCCTACTGAGATCGTTGGAACCAATGAGAAACTCGTGCCTAATGTTACAGTCGCACAAGATGGCAGCGGAAACTTCAAAACCGTTTCTGAGGCTTTGGCTGCAATCCCAAAAACATACACTGGCAGGTACGTGGTTTATGTTAAAGCCGGAGTATACGATGAGACAGTGACAGTGACAAAGCAAATGACGAACCTAACCATGTTTGGTGATGGAATGGACAAGAGTATCATCACTGGCAACAAGAATTACGTGGACGGAGTCAGAACCTTCCAAACTGCATCATTTGTTGTACTTGGAGATGGATTCTTGGGCAAAGACATGGGATTCCAAAACACCGCAGGAGCAGCGAAGCACCAAGCAGTGGCAGCGAGAGTGCAAGCCGACCAAGCAGTGTTCTTCAACTGTCTCTTCGACGGTTACCAAGACACACTCTACGCCCAAACCCACAGGCAATTCTACCGCGACTGCGTGATCACGGGCACCATCGACTTCATCTTCGGCGACGCCTCAGCAGTGTTCCAAAACTGCACCATGGTGGTGCGAAAGCCCCTGGAAACCCAGCAGAACATCGTGACCGCACAAGGCAGAATCGACAAGCAAGAGGACACTGGCTTCGTTCTCCAGAAGTGCGTCATCAAAGCCTCCGATGACTTGCCTCCCGAAACCAAGAACTACCTCGGAAGGCCATGGAAGGAGTTCTCCCGAACCATCATCATGGAGACCGAGATCAACAGTTTGATTCATCCCGATGGGTGGCTACCTTGGGAAGGTGACTTTGCCCTAAACACACTCTACTATGGTGAGTACAACAACAATGGAGCCGGCGCCAACACCAATGCTAGGGTTCGTTGGTCTACCCTCCATAACATTAACAAGGATGAGGCTACGACTTACACCGTTGAGGCTTTCTTGCAAGGGACGTGGATCAACGGCACAGGCGTACCAGCTCAACTAGGCTTGTACAATTAA 1911 0.4757 MAFQDFDVISERRKNQAKLKMRKKILISVVSAVLLACVIGAAAFVVVQRTGANTKDGVAMKPTGTPHVDQNSRLVGMICGSAEYKDKCENTLNEALKKDPQLAQPKDLLLVTMVVAENEVNKAFNETSKMKFASEEEKGAYEDCKQLFEDAKEELGFSINQVGEIDSDKLSSKAPDLNNWLSAVMSYQQTCIDGFPEGNLKNEFRNAFNESRELVSNALAVVSQVSSFFSIFKGAGNFHLPWESDNNDGASASASAPTSGPVAAQPRGVGIGGVFAPAPRAASGSAAPGSAPTPVPDWDGPIPTWAVPVPAWSGPTEIVGTNEKLVPNVTVAQDGSGNFKTVSEALAAIPKTYTGRYVVYVKAGVYDETVTVTKQMTNLTMFGDGMDKSIITGNKNYVDGVRTFQTASFVVLGDGFLGKDMGFQNTAGAAKHQAVAARVQADQAVFFNCLFDGYQDTLYAQTHRQFYRDCVITGTIDFIFGDASAVFQNCTMVVRKPLETQQNIVTAQGRIDKQEDTGFVLQKCVIKASDDLPPETKNYLGRPWKEFSRTIIMETEINSLIHPDGWLPWEGDFALNTLYYGEYNNNGAGANTNARVRWSTLHNINKDEATTYTVEAFLQGTWINGTGVPAQLGLYN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01324 636 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 226 IPR035513 -
Cca08g01324 636 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 634 - -
Cca08g01324 636 SUPERFAMILY Pectin lyase-like 328 629 IPR011050 -
Cca08g01324 636 PANTHER PECTINESTERASE 14 634 - -
Cca08g01324 636 Gene3D - 322 634 IPR012334 -
Cca08g01324 636 Pfam Plant invertase/pectin methylesterase inhibitor 75 220 IPR006501 GO:0004857
Cca08g01324 636 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 225 IPR006501 GO:0004857
Cca08g01324 636 CDD PMEI-like_3 78 227 - -
Cca08g01324 636 ProSitePatterns Pectinesterase signature 2. 472 481 IPR033131 -
Cca08g01324 636 Pfam Pectinesterase 328 620 IPR000070 GO:0030599|GO:0042545
Cca08g01324 636 SMART PMEI_2 70 221 IPR006501 GO:0004857
Cca08g01324 636 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 225 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01324 Cca-Chr8 39839508 39842381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01324 18 629 Carbohydrate Esterase AT5G49180 40.095 1.89e-146 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01324 - - gmx:100807628 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01324 08 39839508 39842381 Cca08g01324 08 39839508 39842381 ECH