Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01323 ATGGTATCAGAGCTCTTGAAGTTCAAGAGCTATGTAGGTTTCAATTTCCATGGCGAGGAGGTGGTGGTTCAGGCAGTGGACGAGCACCTTCACCTCCACCTTCGGACCTGGCTTTGGATCGAAGGGAAGCATAACAGTACTGGGAATTTGAGCTCTGATTTGACGACATGGTTGAGTGCTACACTTGCGAATACAGACACATGCATGGATGGCTTTGAAGATGCTGTAGTTGCTGCTGATGGGAGTGCAAGTTTTACTAAGGTGATGGATGTTGTGAATGCAGCACCAGAGTATAGCATCAAACGCTTTGTGATACACATTAAGAAGGGTGTTTACACCGAGAGGGTTGAGATTAGTAAGAAAAAGTGA 369 0.458 MVSELLKFKSYVGFNFHGEEVVVQAVDEHLHLHLRTWLWIEGKHNSTGNLSSDLTTWLSATLANTDTCMDGFEDAVVAADGSASFTKVMDVVNAAPEYSIKRFVIHIKKGVYTERVEISKKK 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01323 122 SUPERFAMILY Pectin lyase-like 75 121 IPR011050 -
Cca08g01323 122 PANTHER PECTINESTERASE 74 122 - -
Cca08g01323 122 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 74 122 - -
Cca08g01323 122 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 79 IPR035513 -
Cca08g01323 122 Gene3D - 35 122 IPR012334 -
Cca08g01323 122 Pfam Pectinesterase 74 122 IPR000070 GO:0030599|GO:0042545
Cca08g01323 122 Pfam Plant invertase/pectin methylesterase inhibitor 45 80 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01323 Cca-Chr8 39773564 39777998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01323 42 73 Carbohydrate Esterase AT3G43270 68.750 5.38e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01323 K01051 - gmx:100798620 79.3369