Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01322 ATGGATAAAACCAACTATTGTTTTTCTTTTCTAAATGTGGGAATGAGAACACAAAAATTGGTGATAACCTTTTCAGTATTAGCATGCGCACTGACGTTGGTCTCTATGTCTGATGCAGTCGTAGGTGGTCACCTAGCTCACGATGAATGCAGTCTTACAAGATACCCCAATCTATGTGCTGAAACCTTGATGGAATTGGGTTCAgggaatcataatgttgataatgttgtggctcttgttaacaaaaccatatttgaaaccaacttgccaagttcatattttgcagaattcagGACTGAGGATGCTCATCTAGCCCATTCTGTTGTTGCAGACTACTGTGAAGAGCTAATGAGCATGTCACTGAAAAGGCTGGACCAATCCCTTAGAGCACTAACATCGTCCCCTAGAAGAAACTACCATGACATCCAAACATGGCTAAGTGCTTCTCTAACCTTCCAACAATCATGCAAAGACCATGTACATGCACACACCACAGTCTTCTCAGCAGATAACCTTTTGCAAAAGATGTTCAACAAAATGGACTATCTTTCTCAACTGGGAAGCAACTCATTGGCTCTTGTAAACATGATGAGCACAACATCAAACCACAAACTTAATGAAAAGGAGCAAGAATTTCCTCATTGGGTATCAACTAAAGGACGAAAACTGCTTCAAGGAGGCACCATAAAAGCAAATGCAGTAGTAGCACAAGATGGCTCAGGAAACTACAAAACGGTTTCTGAGGCCATTGAGGCTGCTTCAGGAGCAAGGTTTGTGATTTATGTTAAGAAAGGGGTTTATAAGGAGAAGATTCGCACCAACAAGGATGGTATCACGTTGATTGGAGATGGAAAATACTCTACTCTTATTGTTGGCGATGACAGCGTTGCCAAGGGTGCCAGCATGCCTGACACCGCCACATTTACAATCACAGGCGATGGGTTCTTCGCACGAGACATTGGATTCCAAAACAACGCAGGTCCCGAGGGCCAACAAGCCATAGCACTAAACATAGTTTCCGATCATTCTGTCCTCTACAGATGCAGCATAGCAGGATACCAAGACACCCTCTACGCCCACGCCCTCCGTCACTTCTACAGAGAATGCGACATCCACGGCACCATCGACTTCATCTTCGGCAACGCCGCCGCACTCTTCCAATCATGCACCCTCCTCCTCCGCCGCCCCCACGGCGGCGCCTACAACGTCATTCTGGCAAACGGAAGAACCGACGGCGGACAGAACACGGGCTTCTCCGTCCACAAGTGCCGCATAGCGCCGAGCGCGGAGTTCTCCGGCGTGAAGCGGTCCCATAGGTGGTTCCTAGGGAGGCCCTGGAAGGAGTACTCGAGGGCGGTGGTGATGCAGAGTGCCATCGACGATGCTGTGGCTCCGACGGGGTGGGTGGAGTGGCCAGGGTGTGGAAGCTCCGTGTTGAGGACTTTGTACTTTGCGGAGTACGGTAACGAAGGAGGTGGTGCTGGAACTAGCAAGAGGGTGCAGTGGCCGGGTTTTCGTGTTCTTGGGGCTCAAGAGGCTCTCAAGTTCACTGTTGCTACCTTCATCGCTGGAAATTCCTGGATTCCCTCCACTGGGGTTGCTTTCATTTCGGGGCTTAATTGA 1623 0.467 MDKTNYCFSFLNVGMRTQKLVITFSVLACALTLVSMSDAVVGGHLAHDECSLTRYPNLCAETLMELGSGNHNVDNVVALVNKTIFETNLPSSYFAEFRTEDAHLAHSVVADYCEELMSMSLKRLDQSLRALTSSPRRNYHDIQTWLSASLTFQQSCKDHVHAHTTVFSADNLLQKMFNKMDYLSQLGSNSLALVNMMSTTSNHKLNEKEQEFPHWVSTKGRKLLQGGTIKANAVVAQDGSGNYKTVSEAIEAASGARFVIYVKKGVYKEKIRTNKDGITLIGDGKYSTLIVGDDSVAKGASMPDTATFTITGDGFFARDIGFQNNAGPEGQQAIALNIVSDHSVLYRCSIAGYQDTLYAHALRHFYRECDIHGTIDFIFGNAAALFQSCTLLLRRPHGGAYNVILANGRTDGGQNTGFSVHKCRIAPSAEFSGVKRSHRWFLGRPWKEYSRAVVMQSAIDDAVAPTGWVEWPGCGSSVLRTLYFAEYGNEGGGAGTSKRVQWPGFRVLGAQEALKFTVATFIAGNSWIPSTGVAFISGLN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01322 540 SMART PMEI_2 41 193 IPR006501 GO:0004857
Cca08g01322 540 SUPERFAMILY Pectin lyase-like 229 538 IPR011050 -
Cca08g01322 540 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 19 538 - -
Cca08g01322 540 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 197 IPR006501 GO:0004857
Cca08g01322 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 198 IPR035513 -
Cca08g01322 540 Pfam Pectinesterase 232 525 IPR000070 GO:0030599|GO:0042545
Cca08g01322 540 Gene3D - 226 539 IPR012334 -
Cca08g01322 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 198 IPR035513 -
Cca08g01322 540 Pfam Plant invertase/pectin methylesterase inhibitor 47 193 IPR006501 GO:0004857
Cca08g01322 540 CDD PMEI-like_3 50 199 - -
Cca08g01322 540 PANTHER PECTINESTERASE 19 538 - -
Cca08g01322 540 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01322 Cca-Chr8 39736927 39767653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01322 113 539 Carbohydrate Esterase AT2G45220 46.853 3.79e-124 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01322 K01051 - gmx:100795439 878.626