Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01318 ATGGGTCTTTTCTCAACCAAAAAGATGACACAAATTCCCACCATCACATTCATCTTCTTGTGGTTGGTGGTGTTCCCGTGTGTCCCTTTAGTTCACTCTGATTTTGTGCCACTCGTGAAAGTTTCTCCTTCTCAATTCATACGCTCCATGAGAGCTGTAGGTGATATTTTGCAAAACGTGATCTCCACTCTCAAATCTGGATTCAACATTAATATTGTCAATAATGATTTTTGTCTTTTTGATGCCATTTCCGCATGGAAGCATAACAGTACTGGGAATTTGAGCTCTGATTTGACGACATGGTTGAGTGCTACACTTGCGAATACAGACACATGCATGGATGGCTTTGAAGATGCTGTAGTTGCTGCTGATGGGAGTGCAAGTTTTACTAAGGTGATGGATGTTGTGAATGCAGCACCAGAGTATAGCATCAAACGCTTTGTGATACACATTAAGAAGGGTGTTTACACCGAGAGGGTTGAGATTAGTAAGAAAAATTTCAAGATGTTCGACGGGTTAGATCAGCCATCTATGGCACACTCTAAGAGCGGGTCTTCGTGCACCATGTCATCATCCACTAAATCACCCTCTTTTGCTTTGAGTTCTGATGAATCAACTTTCTATCTTATCGAAAACACCAATGTCTATGGGGCTGAGAGGCCATTGATAAAGAGGAAGGTGATCAACATCGTTGAGAGTTGA 702 0.4174 MGLFSTKKMTQIPTITFIFLWLVVFPCVPLVHSDFVPLVKVSPSQFIRSMRAVGDILQNVISTLKSGFNINIVNNDFCLFDAISAWKHNSTGNLSSDLTTWLSATLANTDTCMDGFEDAVVAADGSASFTKVMDVVNAAPEYSIKRFVIHIKKGVYTERVEISKKNFKMFDGLDQPSMAHSKSGSSCTMSSSTKSPSFALSSDESTFYLIENTNVYGAERPLIKRKVINIVES 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01318 233 PANTHER PECTINESTERASE 118 174 - -
Cca08g01318 233 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 118 174 - -
Cca08g01318 233 SUPERFAMILY Pectin lyase-like 119 203 IPR011050 -
Cca08g01318 233 Pfam Plant invertase/pectin methylesterase inhibitor 81 124 IPR006501 GO:0004857
Cca08g01318 233 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 123 IPR035513 -
Cca08g01318 233 Gene3D - 116 227 IPR012334 -
Cca08g01318 233 Pfam Pectinesterase 118 217 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01318 Cca-Chr8 39640944 39645485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01318 118 183 Carbohydrate Esterase AT3G43270 52.174 2.41e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01318 K01051 - gmx:100798620 99.7525