Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01317 ATGAACTTTCCTTCCCTTTTCCTTCAAAGACTTGATTCATTCATTCCCCCAATGACTCCAACTCCCACCACCACATTCATCTTGTTCGTGTTGTTGGTGGTGTCTCCACGTGTCCCTTTTGTTCGCTCTGATTTTGCGGGACTTGGGAGCCTGAATGTGGCTCCTCATGAATTCATAGGATCCGTGAGAATAGTTGGTGATGTTTTTCAAAACATGACTTCCACTCTCAAATCTGTGTTCAGCATTAATGTCGATAGTCACTTTCGTCTTTCTGACGCAATTGCCGCGTGTCTCGAGTTGTTTGATTTGTCAGCTGATGAACTCAGCTGGTCCATTTCCGCAGTTCAAAGTCCCCAAGGGAAGCATAACAGTACTGGGAATCTGAGCTCCGATTTGAGGACATGGTTGAGCGCTGCACTTGCGAATACAGACACATGCATGGATGGTTTTGAAGGTACGAGTGGGAATATGAAGGGTTTAATATCCTCTCAAATCGACCAAGCAAAGGTTTTGCTCCAAAAGCTGGTGACCCAGGTGAAGCCTGTTTGGGATGATTTCAGTGCAATTAGTAGTGCCAAATTTCCCTCATGGGTTGAAGTAGAGGACAAGATGATGATGCAAAGTAATGGGGTGCGTGCGGATGCTGTAGTTGCTGCTGATGGGAGTGAAAATTTTACTAAGGTGATGGATGCTGTGAATGCAGCACCAGAGTATAGCATCAAGCGCTTTGTGATACACATTAAGAAGGGTGTTTACGACGAGAGGGTTGAGATTAGTAAGAAAAAGTGGAACCTCTTCATGATTGGAGATGGTATGGATTCAACTGTTATCACTGGTAACGTGAGTTATAGTCAAAATGTCACCACGTTCAGGACAGCTACCTTTGCTGTGAATGGAAGAGGATTCATAGCACGAGACATTTCCTTTAGGAACACTGCAGGCCCAGAGAAGCACCAAGCAGTGGCACTAAGATCAGATTCAGACCTTTCTGTGTTCTACCGATGTGGGGTTTCTGGCTACCAAGACACCCTCTACGCCCACTCCTTGCGCCAATTCTACAGAGAGTGCAAAATTAGTGGCACCGTTGATTTCATATGTGGGCATGCCAATGTAGTGTTCCAAAACTGCACACTATTGGTCAAGAAAGGCTTACCACTGCAGAAAAACACAATCACGGCTCAATCGGAAACAGACCCAACTCAATCATCTGGTTTCTCCATCCAATTCTGCAACATTTCAGCAGATTATGACCTTGTACCCTTACTTAACACAACCTCAACATACCTTGGAAGACCCTGGAAGGCATATTCTAGAACAATTGTGATGCAGTCCTACATTAGTGAGGTGTTAAGGCCAGAAGGGTGGCTAGAGTGGAATGGATCATTGTATTTGGATACATTGTACTATGCTGAGTACAATAATTATGGACCAGGGGCTAAACTTGATAACAGAGTCAAATGGCCAGGGTACCATGTCATTAATGATTCTACCCAGGCTTATAATTTCACCGTGGCACATCTCATTTTGGGGCATTTATGGTTACCTTCAACAGGTATAACTTTCGCTCCAGGATTTGAGGATTGA 1584 0.4444 MNFPSLFLQRLDSFIPPMTPTPTTTFILFVLLVVSPRVPFVRSDFAGLGSLNVAPHEFIGSVRIVGDVFQNMTSTLKSVFSINVDSHFRLSDAIAACLELFDLSADELSWSISAVQSPQGKHNSTGNLSSDLRTWLSAALANTDTCMDGFEGTSGNMKGLISSQIDQAKVLLQKLVTQVKPVWDDFSAISSAKFPSWVEVEDKMMMQSNGVRADAVVAADGSENFTKVMDAVNAAPEYSIKRFVIHIKKGVYDERVEISKKKWNLFMIGDGMDSTVITGNVSYSQNVTTFRTATFAVNGRGFIARDISFRNTAGPEKHQAVALRSDSDLSVFYRCGVSGYQDTLYAHSLRQFYRECKISGTVDFICGHANVVFQNCTLLVKKGLPLQKNTITAQSETDPTQSSGFSIQFCNISADYDLVPLLNTTSTYLGRPWKAYSRTIVMQSYISEVLRPEGWLEWNGSLYLDTLYYAEYNNYGPGAKLDNRVKWPGYHVINDSTQAYNFTVAHLILGHLWLPSTGITFAPGFED 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01317 527 Pfam Plant invertase/pectin methylesterase inhibitor 72 169 IPR006501 GO:0004857
Cca08g01317 527 Gene3D - 208 525 IPR012334 -
Cca08g01317 527 CDD PMEI-like_4 26 182 - -
Cca08g01317 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 166 IPR035513 -
Cca08g01317 527 Pfam Pectinesterase 214 510 IPR000070 GO:0030599|GO:0042545
Cca08g01317 527 SMART PMEI_2 54 182 IPR006501 GO:0004857
Cca08g01317 527 PANTHER PECTINESTERASE 54 525 - -
Cca08g01317 527 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 54 525 - -
Cca08g01317 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 180 IPR035513 -
Cca08g01317 527 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Cca08g01317 527 SUPERFAMILY Pectin lyase-like 211 523 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01317 Cca-Chr8 39615032 39617857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01317 26 525 Carbohydrate Esterase AT3G43270 56.117 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01317 K01051 - gmx:100798620 759.985