Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01316 ATGGCTTATTCATATCCTAAACTTTTCTTTCTTCTGTTTGCAATCTTCTTGTCACACACTTGTGCTGTCAACTCTTCCAATGCTTCCACAACACTTCACACCAATCTCTCTTCCTTAAGATCTTTCTGCACATCAACCCCTTACCCAGAAGTTTGTTTCAACTCATTGAAGCTATCCATCACAATAAACATAAGTCCAAACATTCTCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAACCACAAAGCTCTCAAACCTCTTCCACAACGTTGGACACACAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAAGACTGCAGCGAACTCCACCAATCCACTTTGATTTCTTTGAAAAGATCACTATCAGGGATCCGTTCCACCAACTCCAAGAACATAGTTGATGCAAGAGCATACCTCAGTGCAGCACTCACCAACAAGAACACGTGTCTAGAAGGCCTAGATTCTGCTTCTGGCACCATGAAGCCAACACTGGTGAAATCTGTGATCAACACTTACAAGCATGTTAGTAACTCTCTTTCAATGATCTCTAAGCCAGGAAAAGGGTCTACCAAAGGCCAAAAAAACCAGCCTTTGATGGGTGATTCAAAGTGGCTATCAAGAAGTGACCAAGGACTCTTGCAAGACTCAGATGGGGAAGGATATGACCCAAATGAAGTGATTATTGTGGCTGCAGATGGAACTGGGAACTTTACCACCATCACTGATGCTATCAACTTTGCTCCGAATAACAGCATGGTTAGGACAGTGATCTATGTCAAGGAAGGGATTTATGAGGAAAATGTGGAAATTCCAAGCTTTAAGACCAACATTGTGATGCTTGGCGATGGAAGTGATATCACTGTCATAACTGGTAACAGAAGCGTTGGTGATGGATGGACCACTTTCAGATCTGCTACTCTAGCGGTTTCTGGTGATGGCTTTCTGGCACGTGACATAGCCTTTGTGAACAGCGCAGGGCCAGAGAAGCACCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCTTTCTACAGGTGTGCAATTTATGGTTACCAAGACACATTATATGTTCACTCCTTCAGACAATTCTACAGAGAGTGTGACATTTATGGGACCATAGACTTCATCTTTGGAAACGCAGCAGTGATCCTACAAGAATGCAACATCATATCTAGAAAACCAATGCCAGGCCAATTCACTGTCATCACTGCACAATCCAGAGATAGCCCTGATGAGGACACTGGCATCTCAATCCAAAACTGTTCAATCATAGCTACTGTTGATTTGTATTCCAACTCTAGTAGCTTCAAGAGCTACCTTGGGAGGCCGTGGAGGGTTTATTCTCGTACCGTGTACCTTGAGTCATACATTGATGATTTCATTGACCCTAGGGGTTGGACTAAGTGGTCTAATGAGCAAGGATTGGACACTTTGTATTATGGGGAGTTTGACAATTATGGACCTGGTTCCTCCACTGATAATAGGGTAGAATGGTTTGGGTACCATTTGATGGACTATGATGATGCCTATAATTTCACGGTTTCGGAGTTTATCAATGGAGATGGGTGGCTTGGGACTACTTCTTTTCCTTATGATGATGGGATTTGA 1620 0.4315 MAYSYPKLFFLLFAIFLSHTCAVNSSNASTTLHTNLSSLRSFCTSTPYPEVCFNSLKLSITINISPNILNYLLQSLQVAISETTKLSNLFHNVGHTNIIEKQRGAVQDCSELHQSTLISLKRSLSGIRSTNSKNIVDARAYLSAALTNKNTCLEGLDSASGTMKPTLVKSVINTYKHVSNSLSMISKPGKGSTKGQKNQPLMGDSKWLSRSDQGLLQDSDGEGYDPNEVIIVAADGTGNFTTITDAINFAPNNSMVRTVIYVKEGIYEENVEIPSFKTNIVMLGDGSDITVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAFVNSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVILQECNIISRKPMPGQFTVITAQSRDSPDEDTGISIQNCSIIATVDLYSNSSSFKSYLGRPWRVYSRTVYLESYIDDFIDPRGWTKWSNEQGLDTLYYGEFDNYGPGSSTDNRVEWFGYHLMDYDDAYNFTVSEFINGDGWLGTTSFPYDDGI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01316 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 186 IPR006501 GO:0004857
Cca08g01316 539 PANTHER PECTINESTERASE 7 538 - -
Cca08g01316 539 CDD PMEI-like_3 41 190 - -
Cca08g01316 539 SMART PMEI_2 34 184 IPR006501 GO:0004857
Cca08g01316 539 MobiDBLite consensus disorder prediction 183 204 - -
Cca08g01316 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 187 IPR035513 -
Cca08g01316 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 187 IPR035513 -
Cca08g01316 539 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Cca08g01316 539 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Cca08g01316 539 SUPERFAMILY Pectin lyase-like 226 536 IPR011050 -
Cca08g01316 539 Gene3D - 225 539 IPR012334 -
Cca08g01316 539 Pfam Pectinesterase 230 525 IPR000070 GO:0030599|GO:0042545
Cca08g01316 539 PANTHER PECTINESTERASE 7 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01316 Cca-Chr8 39587315 39589726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01316 20 539 Carbohydrate Esterase AT2G26440 63.910 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01316 - - gmx:100776969 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01316 08 39587315 39589726 Cca08g01316 08 39587315 39589726 ECH