LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01315	ATGGCTCTGTCTTCAACGAAAGCAACACCCACTATCACACTCATGTTTTTGCTTGTGCTGTCACCCACCCTGTGTACCCCACTGGGTGAGACTAACACCGCGGGATTCGAGCTGCTTAAGGTTTCACCCTCGGAGTTCGCAGGTACAGTGAGAACCGTCGTTGATGTGTTGCAAGATGTTACCTCTATTCTCTCCGAGTTCGGCTCTGCCTTCGGCGATTCGCGTCTTTCTAACGCCGTTTCGGATTGTCTCGATTTGCTCGACTTGTCCTCCGATGAACTCGATTGGTCTGTCTCCGCTACACAGACTCCCAAAGGGAAACATAACAGCACAGGGAACCTGAGTTCGGATTTAAGGACATGGCTAAGTGCGGCGCTTGCGAACCAAGACACGTGCATGGATGGGTTGGAAGGCACGAACGGCATGGTGAAGGGCTTAGTGTCCAGTGGGCTGGGCCAAGTGATGACCCTGCTCCAACAACTCCTAACACAGGTGAACCCTGTTTCGGATTTCTCTTCCACGCAGGGCCAATTCCCCACGTGGGTTAAACCAGGGGACAGGAAGCTGCTTCAGGCGAATGGGGTCCACGCCGATGCGGTGGTGGCTACCGACGGGACCGGTAACTTCACCAAGATCAAGGATGCGGTGCTGGCCGCGCCTAACTACAGCATGAGGCGCTTTGTCATATACGTGAAGAAGGGGGTTTACCATGAGAACGTGGAGATCAAGAAGAAGAAGTGGAACCTCATGATGCTCGGTGATGGCATGGATGCAACCGTTGTTTCCGGTAACCGGAGCTTCGTCGACGGTTGGACCACGTTCCGCTCAGCTACCTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATAACCTTCCAGAACACCGCAGGCCCAGAGAAGCACCAAGCGGTAGCACTAAGATCAGACTCAGACCTTTCTGTGTTCTACCGATGTGGGATTTCGGGTTACCAAGACAGCCTCTACACTCACACCATGCGCCAATTCTACAGAGAGTGCAAAATCAGTGGCACCGTGGATTTCATTTTCGGTGACGCCACTGCACTTTTCCAAAACTGCCACATAGTGGCCAAAAAAGGGTTACCAAATCAGAAGAACACGATCACAGCACACGGGAGAAAAGACCCTGAGGAACCAACGGGTTTCTCCATCCAATTTTGCAACATTTCTGCTGATTCTGACCTTGTAAAATCGGTTAACTCCACTCACACGTACCTTGGAAGACCGTGGAAGCCATATTCTAGAACAATTTTCATGCAATCTTATATTAGTGATGTGTTGAGGCCTGAAGGGTGGTTGGAGTGGAATGGGGACTTGGGCTTGGACACGTTGTACTATGCAGAGTACATGAATTATGGGCCTGGTGCTGGGCTTTCTGATCGTGTGAAATGGCCCGGGTACCATGTGATGAATGATTCTAGCCAGGCTAGTAATTTCACGGTGACACAATTTATTGAGGGGAATCTTTGGTTACCTTCTACGGGTGTAACGTTCACTGCTGGATTGGGCGTGTGA	1536	0.5111	MALSSTKATPTITLMFLLVLSPTLCTPLGETNTAGFELLKVSPSEFAGTVRTVVDVLQDVTSILSEFGSAFGDSRLSNAVSDCLDLLDLSSDELDWSVSATQTPKGKHNSTGNLSSDLRTWLSAALANQDTCMDGLEGTNGMVKGLVSSGLGQVMTLLQQLLTQVNPVSDFSSTQGQFPTWVKPGDRKLLQANGVHADAVVATDGTGNFTKIKDAVLAAPNYSMRRFVIYVKKGVYHENVEIKKKKWNLMMLGDGMDATVVSGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECKISGTVDFIFGDATALFQNCHIVAKKGLPNQKNTITAHGRKDPEEPTGFSIQFCNISADSDLVKSVNSTHTYLGRPWKPYSRTIFMQSYISDVLRPEGWLEWNGDLGLDTLYYAEYMNYGPGAGLSDRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGLGV	511

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01315	511	PANTHER	PECTINESTERASE	174	509	-	-
	Cca08g01315	511	PANTHER	PECTINESTERASE	40	168	-	-
	Cca08g01315	511	PANTHER	PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED	174	509	-	-
	Cca08g01315	511	PANTHER	PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED	40	168	-	-
	Cca08g01315	511	Pfam	Plant invertase/pectin methylesterase inhibitor	66	149	IPR006501	GO:0004857
	Cca08g01315	511	Gene3D	Invertase/pectin methylesterase inhibitor family protein	36	167	IPR035513	-
	Cca08g01315	511	SMART	PMEI_2	42	168	IPR006501	GO:0004857
	Cca08g01315	511	CDD	PMEI-like_4	9	169	-	-
	Cca08g01315	511	Gene3D	-	195	511	IPR012334	-
	Cca08g01315	511	SUPERFAMILY	Pectin lyase-like	195	508	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01315	Cca-Chr8	39549871	39553864	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01315	11	509	Carbohydrate Esterase	AT3G43270	64.479	0.0	716

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01315	K01051		-	gmx:100777500	877.085

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