Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01315 ATGGCTCTGTCTTCAACGAAAGCAACACCCACTATCACACTCATGTTTTTGCTTGTGCTGTCACCCACCCTGTGTACCCCACTGGGTGAGACTAACACCGCGGGATTCGAGCTGCTTAAGGTTTCACCCTCGGAGTTCGCAGGTACAGTGAGAACCGTCGTTGATGTGTTGCAAGATGTTACCTCTATTCTCTCCGAGTTCGGCTCTGCCTTCGGCGATTCGCGTCTTTCTAACGCCGTTTCGGATTGTCTCGATTTGCTCGACTTGTCCTCCGATGAACTCGATTGGTCTGTCTCCGCTACACAGACTCCCAAAGGGAAACATAACAGCACAGGGAACCTGAGTTCGGATTTAAGGACATGGCTAAGTGCGGCGCTTGCGAACCAAGACACGTGCATGGATGGGTTGGAAGGCACGAACGGCATGGTGAAGGGCTTAGTGTCCAGTGGGCTGGGCCAAGTGATGACCCTGCTCCAACAACTCCTAACACAGGTGAACCCTGTTTCGGATTTCTCTTCCACGCAGGGCCAATTCCCCACGTGGGTTAAACCAGGGGACAGGAAGCTGCTTCAGGCGAATGGGGTCCACGCCGATGCGGTGGTGGCTACCGACGGGACCGGTAACTTCACCAAGATCAAGGATGCGGTGCTGGCCGCGCCTAACTACAGCATGAGGCGCTTTGTCATATACGTGAAGAAGGGGGTTTACCATGAGAACGTGGAGATCAAGAAGAAGAAGTGGAACCTCATGATGCTCGGTGATGGCATGGATGCAACCGTTGTTTCCGGTAACCGGAGCTTCGTCGACGGTTGGACCACGTTCCGCTCAGCTACCTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATAACCTTCCAGAACACCGCAGGCCCAGAGAAGCACCAAGCGGTAGCACTAAGATCAGACTCAGACCTTTCTGTGTTCTACCGATGTGGGATTTCGGGTTACCAAGACAGCCTCTACACTCACACCATGCGCCAATTCTACAGAGAGTGCAAAATCAGTGGCACCGTGGATTTCATTTTCGGTGACGCCACTGCACTTTTCCAAAACTGCCACATAGTGGCCAAAAAAGGGTTACCAAATCAGAAGAACACGATCACAGCACACGGGAGAAAAGACCCTGAGGAACCAACGGGTTTCTCCATCCAATTTTGCAACATTTCTGCTGATTCTGACCTTGTAAAATCGGTTAACTCCACTCACACGTACCTTGGAAGACCGTGGAAGCCATATTCTAGAACAATTTTCATGCAATCTTATATTAGTGATGTGTTGAGGCCTGAAGGGTGGTTGGAGTGGAATGGGGACTTGGGCTTGGACACGTTGTACTATGCAGAGTACATGAATTATGGGCCTGGTGCTGGGCTTTCTGATCGTGTGAAATGGCCCGGGTACCATGTGATGAATGATTCTAGCCAGGCTAGTAATTTCACGGTGACACAATTTATTGAGGGGAATCTTTGGTTACCTTCTACGGGTGTAACGTTCACTGCTGGATTGGGCGTGTGA 1536 0.5111 MALSSTKATPTITLMFLLVLSPTLCTPLGETNTAGFELLKVSPSEFAGTVRTVVDVLQDVTSILSEFGSAFGDSRLSNAVSDCLDLLDLSSDELDWSVSATQTPKGKHNSTGNLSSDLRTWLSAALANQDTCMDGLEGTNGMVKGLVSSGLGQVMTLLQQLLTQVNPVSDFSSTQGQFPTWVKPGDRKLLQANGVHADAVVATDGTGNFTKIKDAVLAAPNYSMRRFVIYVKKGVYHENVEIKKKKWNLMMLGDGMDATVVSGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECKISGTVDFIFGDATALFQNCHIVAKKGLPNQKNTITAHGRKDPEEPTGFSIQFCNISADSDLVKSVNSTHTYLGRPWKPYSRTIFMQSYISDVLRPEGWLEWNGDLGLDTLYYAEYMNYGPGAGLSDRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGLGV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01315 511 PANTHER PECTINESTERASE 174 509 - -
Cca08g01315 511 PANTHER PECTINESTERASE 40 168 - -
Cca08g01315 511 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 174 509 - -
Cca08g01315 511 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 40 168 - -
Cca08g01315 511 Pfam Plant invertase/pectin methylesterase inhibitor 66 149 IPR006501 GO:0004857
Cca08g01315 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 167 IPR035513 -
Cca08g01315 511 SMART PMEI_2 42 168 IPR006501 GO:0004857
Cca08g01315 511 CDD PMEI-like_4 9 169 - -
Cca08g01315 511 Gene3D - 195 511 IPR012334 -
Cca08g01315 511 SUPERFAMILY Pectin lyase-like 195 508 IPR011050 -
Cca08g01315 511 Pfam Pectinesterase 198 495 IPR000070 GO:0030599|GO:0042545
Cca08g01315 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 159 IPR035513 -
Cca08g01315 511 ProSitePatterns Pectinesterase signature 2. 342 351 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01315 Cca-Chr8 39549871 39553864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01315 11 509 Carbohydrate Esterase AT3G43270 64.479 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01315 K01051 - gmx:100777500 877.085