Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01311 ATGGCCGGTGGCGTCACTGTCAAGTCCGAGGTCTTAGGTCTAGAATCTTCTCCTCCTGAAGGACTTTCTTCCAACACCGAGGATGTCTCACCCAACAAGTCATCTGGACTCAATGCAGTGATTCCTAGTTCAAACCAGCTTACCATCTTCTATAATGGGAGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCTACTGAAATGAAGAAGATTGCGGCGCAATCTACCCTCATTTCACCCGTTCCCTCAAGGCCTTCTTCTCCACATGGAATCACTAATAATATTGCTTCCTCACAGAATACTTCCATCTGCAGGCTGCAAGATGAATTTCCAATAGCACGCAGACATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGGCTGGGTAGCAAAGCTCCTTATCCATCCTCATCAACTACAAAAGTGGCTGACAACATAGAGAACAACTTCTGTGCTGACAATGCACCAGAATTGAATTCCTTGATTCGATCAGAGGAGGAATTTCAGCCAACTGTTTCTGCCTCTGGAGCGTAG 579 0.4594 MAGGVTVKSEVLGLESSPPEGLSSNTEDVSPNKSSGLNAVIPSSNQLTIFYNGSVCVYDGIPAEKVHEIMLIAAAAAKSTEMKKIAAQSTLISPVPSRPSSPHGITNNIASSQNTSICRLQDEFPIARRHSLQRFLEKRRDRLGSKAPYPSSSTTKVADNIENNFCADNAPELNSLIRSEEEFQPTVSASGA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01311 192 Pfam Jas motif 125 149 IPR018467 -
Cca08g01311 192 PANTHER DIVERGENT CCT MOTIF PROTEIN 31 168 - -
Cca08g01311 192 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 31 168 IPR040390 -
Cca08g01311 192 SMART tify_2 40 75 IPR010399 -
Cca08g01311 192 ProSiteProfiles Tify domain profile. 40 75 IPR010399 -
Cca08g01311 192 MobiDBLite consensus disorder prediction 1 37 - -
Cca08g01311 192 Pfam tify domain 42 74 IPR010399 -
Cca08g01311 192 MobiDBLite consensus disorder prediction 18 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01311 Cca-Chr8 39449468 39455120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01311 45 156 Tify Gene Family AT5G20900 52.101 1.00e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca08g01311 tify 8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01311 K13464 - gmx:100306045 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02599 11 53255750 53258810 Cca08g01311 08 39449468 39455120 PCT