Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01299 ATGGAAGAAAAAGTTGTGCTAAAAGAATTGCTGCAAGATGAGGAACCCTCCAATCATAGTACTATTGGATCTACTCTTCTGAGCTTGAGCCTGAATAACTCTGGACCAACCATTACCCAAATGAGCATGCTGAGAATAAAGCTTGAGGAAGCGAAGAAGGAGAATGAGATTTTAAAGGCTACGCTGAATCAGGTTAATGAACACTGCACTGCTCTTAAGAATCGCATACTTTTTGAGATTCAGCAGCATCAATTATCTTCATCATCACCTCTCAATAAAAATCTTGACTCGCAGGGAAATAGAAAAGATGAGGAGAAACCAATGCTACACACTCGACAGTTTTTGAATATTGGTGAGTCTTCACTTTTAGACGGCAACACAGAAGCACGTGCCTCAGCTGAAAACATTGAAAAGAAAATATTAGGAAGAAACGTTGCATGTGATAAGTACAATGGTGAAGGTGAAATCAAAAGCCAAACAACATCGCATGAACCAAAACACACAGAAGATCAAGCATTAGAGGCTACTTGCAGGAGAGCTAAAGTTTCCATAAGAGCACGATCAGatttttctttgATCGGTGATGGGTGTCAATGGAGAAAATATGGACAGAAGACAGCGAAAGGAAACCCTTGTCCCCGAGCCTACTACCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAAAGGTGTTTTAAGGATGAGACTGTTCTCATCACAAGCTATGAAGGGAACCATAACCATCCACTACCAGCAGCAGCAAGACCTTTGGCAAGCTCAACATCAGCTGCATTGAACATGTTCCTTTCTGGCTCAATCACAAGCAATTCACATATCATACCAATACCAAATCCACACCTCTTCTCAGCTTCTTCACCATCCAACATTTCCCCAACTGCTGTGGCCACTTTCTCCCAGTCTGCAACATGTCCCACAGTAACACTGGACTTAACCCAACCCCACAATAACTACATGCAATTCCAAAGAGCCACTACTACTCCATCGTTCCCTCTTTCACTGCATGGCCACCCTCAGGTCAATTCTATGCTTCCAATAACCATGCTAAGTACCCCAGAGAAAAACCTTGACTTGGTGGATGTTGTGAGTGAAGCTATAGCCAAAGATCCTTCTCTCAAAGCAGCACTGTTTTCAGCCATTTCCTCACTCACTGGAGAAGCACAGAACATGATCGATAACCAAAGCCAACAAAGTAAGAGTGGTTATGACCCTTGTTCTAAGATGCCGGCAATACCACCTCATCAACCTTACACTACTCAGTTGATATAG 1296 0.429 MEEKVVLKELLQDEEPSNHSTIGSTLLSLSLNNSGPTITQMSMLRIKLEEAKKENEILKATLNQVNEHCTALKNRILFEIQQHQLSSSSPLNKNLDSQGNRKDEEKPMLHTRQFLNIGESSLLDGNTEARASAENIEKKILGRNVACDKYNGEGEIKSQTTSHEPKHTEDQALEATCRRAKVSIRARSDFSLIGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITSYEGNHNHPLPAAARPLASSTSAALNMFLSGSITSNSHIIPIPNPHLFSASSPSNISPTAVATFSQSATCPTVTLDLTQPHNNYMQFQRATTTPSFPLSLHGHPQVNSMLPITMLSTPEKNLDLVDVVSEAIAKDPSLKAALFSAISSLTGEAQNMIDNQSQQSKSGYDPCSKMPAIPPHQPYTTQLI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01299 431 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 405 IPR044810 GO:0003700
Cca08g01299 431 SUPERFAMILY WRKY DNA-binding domain 187 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01299 431 Gene3D WRKY domain 178 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g01299 431 Coils Coil 41 75 - -
Cca08g01299 431 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 10 405 - -
Cca08g01299 431 MobiDBLite consensus disorder prediction 87 106 - -
Cca08g01299 431 MobiDBLite consensus disorder prediction 402 431 - -
Cca08g01299 431 ProSiteProfiles WRKY domain profile. 188 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01299 431 Pfam WRKY DNA -binding domain 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g01299 431 SMART WRKY_cls 193 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01299 Cca-Chr8 39068258 39075320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01299 44 322 WRKY Transcription Factor Family AT4G04450 40.584 2.48e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g01299 WRKY 4.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01299 - - gmx:100816719 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01299 08 39068258 39075320 Cca11g02615 11 53373926 53377990 PCT