Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01287 ATGTGCTTCATTTATTTGGATGTTAATACAAAACCAAAATGCTGTGTTTATTTTTATAAACTTTTCCCCCATTATTATTTTCTTCCGGGAAATGAACTCCTGTTGGTATATTTGTTTGGCAGCAGCAAAATGGCATCTGATCTGAATTCGGGGTTGTCCAAAAAAACTTTTGTTTTTGGATTGAAAGTGTGGGTACTAATGGGAATAATAGTTGGGTTATTCATCATAATCATTCTTGTCGTGCTATCAATATGTCTTACTTTAAGAAAGAAGTTCAGAAGAATAAATGGCATGCTTCCACTTAGCCATGTGTTATCTGTTTCGGAAGAGATAAAAGAAATCAGAGTTGATCAAGTTTCAGCAAGTAATCATCCACAAAATGGTGCTTTTAAGAGTCTGAATGAGAAATTTGGTGACAGGGAGTCTGAGAAGGTTTTGGTCCAAACTAAGAATGCGGACAATAGTAGTCAATCAGGCTCGTTTAATCATTTAGAGAAAGATGCTAACGGCTCTCAATCAGGCGAAGAAAGCGGTGTTAAGAGCATTTCTACTTACAGGTCTTCTTCGCATCCTATAACCGCGCCGTCCCCGTTGTCTGGGCTGCCTGAATTCTCACACCTTGGCTGGGGCCACTGGTTTACCTTAAGGGACCTTGAACTCGCAACAAATAGGTTTTCAAAAGACAATGTTATTGGTGAAGGAGGATATGGAATTGTTTATCAAGGTCAGTTAATCAATGGGAATCCTGTGGCCATAAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTCAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTTCGACTTTTGGGCTATTGCATTGAAGGAACTCATAGGTTGTTGGTTTATGAGTATGTTAACAATGGCAACTTAGAGCAGTGGCTTCATGGAGCGATGCGGCAGCATGGATTTCTTACCTGGGATGCTCGGATAAAAATTCTCCTCGGAACATCCAAAGCGCTGGCTTATTTGCATGAGGCAATTGAACCAAAAGTTGTGCATCGAGATATTAAATCGAGCAATATTTTAATTGATGAGGACTTTAATGCCAAGATATCAGACTTTGGGCTGGCTAAGTTACTTGGTGCTGGAAAAAGTCATATTACCACTAGAGTTATGGGTACTTTTGGATATGTTGCTCCAGAATATGCCAATTCTGGCTTGCTAAATGAGAAGAGTGATGTATATAGCTTTGGGGTATTGCTCCTTGAGGCAATTACAGGAAGAGACCCTGTGGATTATAGCCGACCAGCCGCTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTAGGGTGTCGGCGATCAGAGGAGGTGTTGGACCCGAACATTGAGACGAGGCCATCCACAAGTGCCCTTAAACGAGCCCTCTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAGGATGAGCCAAGTTGTCCGCATGCTCGAATCAGAGGAATATCCTATACCACGAGAGGATCGAAGACGCCGAAGGAGTCAGGCAGGAAACATGGAGGTGGACACTCAGAGGGAGAATTCTGATACAGATAAGAGTGACAATCCAGATTATAAGCCCAATGGCAGAAGGAACCATCACGTGTAG 1644 0.4215 MCFIYLDVNTKPKCCVYFYKLFPHYYFLPGNELLLVYLFGSSKMASDLNSGLSKKTFVFGLKVWVLMGIIVGLFIIIILVVLSICLTLRKKFRRINGMLPLSHVLSVSEEIKEIRVDQVSASNHPQNGAFKSLNEKFGDRESEKVLVQTKNADNSSQSGSFNHLEKDANGSQSGEESGVKSISTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGIVYQGQLINGNPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTSKALAYLHEAIEPKVVHRDIKSSNILIDEDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGCRRSEEVLDPNIETRPSTSALKRALLTALRCVDPDSEKRPRMSQVVRMLESEEYPIPREDRRRRRSQAGNMEVDTQRENSDTDKSDNPDYKPNGRRNHHV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01287 547 Gene3D Transferase(Phosphotransferase) domain 1 301 512 - -
Cca08g01287 547 SUPERFAMILY Protein kinase-like (PK-like) 209 504 IPR011009 -
Cca08g01287 547 CDD STKc_IRAK 231 497 - -
Cca08g01287 547 PANTHER RECEPTOR-LIKE KINASE PLANT 45 546 - -
Cca08g01287 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Cca08g01287 547 PANTHER OS01G0323000 PROTEIN 45 546 - -
Cca08g01287 547 MobiDBLite consensus disorder prediction 149 193 - -
Cca08g01287 547 Pfam Protein kinase domain 226 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01287 547 ProSiteProfiles Protein kinase domain profile. 225 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01287 547 Gene3D Phosphorylase Kinase; domain 1 206 300 - -
Cca08g01287 547 MobiDBLite consensus disorder prediction 483 541 - -
Cca08g01287 547 ProSitePatterns Protein kinases ATP-binding region signature. 231 254 IPR017441 GO:0005524
Cca08g01287 547 SMART serkin_6 225 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g01287 547 MobiDBLite consensus disorder prediction 483 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01287 Cca-Chr8 38770820 38775868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01287 60 499 Trihelix Transcription Factor Family AT1G70460 40.045 4.61e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca08g01287 Pkinase 5.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01287 - - gmx:100818864 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01287 08 38770820 38775868 Cca08g01287 08 38770820 38775868 ECH
Cca11g02637 11 53630600 53635637 Cca08g01287 08 38770820 38775868 PCT