Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01284 ATGGAGGCTCAATTAGAGGGGAAAAGTCCATATTTTTATGGACCTGTGGTGCCGGAGATGAAGAGTGTTGGAAAGAGAAGTTTAGAATGGGATTTGAATGATTGGAAATGGGATGGGGATCTTTTCACTGCTAGGCAACTGAATTCAGTGCCATCAGATTGTGGGAGTCGTCAATTGTTCCCTACTGATCCTGAAATTCTTGCAACTGCTGATGGTACTAACAATTTGTCTCCTGCATATGATGGTGTTAACCTTGGGGAAGAAAAGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTATTGAAGAAGCAGGGGTGGAAATGAATGATGGAACTGGTTCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAGCTGCGAGTAGTTCGAATCGGGCTGTTTGTCAGGTGGAAGATTGTAGGACTGATCTTAGTAATGCGAAGGATTACCACCGTCGCCACAAAGTTTGTGATATGCATTCCAAGGCAAGCCAGGCTCTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTGAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACACATCCTGATGCTACTGTAGTTAATGGAGGCTCTGTGAATGAAGAAAAGGGCAGTACCTATCTGTTAATGAGTCTGCTGAGGATACTATCCAATATGCATTCAAATGGCTCAGATAATATGAGAAACCAGGATGTTCTATCTCATCTGTTGAGAAACCTGGCAAATCTAGCTGGTACAATTAATGGAAGAAATATTGCGTCTTTATTGGATGGATCTCAAGATTTGTTAAAAGCTGGGACATCTGGAACTATGCATAATGTTCCAAACACAAATTCAAATGGTCCCGAACCATCCAGACCTTACAGTTCTTCTATCAAGATGGATGATGGTCTAATCCATCACGACCCTCAAGAGTCTACGTTACAATGTCAGATGACTCCTGCTCATGATATGGCTAAAAAATGTATAGCTTCAGGCAGTGATGGAGTAGTAAAGCTAAAATCTCTATCTCCTTCAGGACCACAGTCCTCAAATGTACTTCTGTCAAGAGATAGCCTTCCAACCCAATCAGTTGCAGCAGGGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACTTGAATAGTGTATATGATGATGTACAGGATTATGTTGAGAACCCAAGGAATTCTCATCCGCCGTTGCCTTCAGGGCTTGGATCTCATGATCACCCTTTATGGGTTCAGTGTGACTCTCTCAGGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACGGATCGAATTGTATTCAAACTATTTGGTAAGGCACCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGCCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGTCTAGAAAATTCTGCATGGGAAGAGCTATGCTATAATCTTGGATCCAGCTTGAAAAAGCTTGCCGCGTCAACTGATTCTTTCTGGAGAACAGGATGGATCTATACAAGAGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTGGATGTACCGTTGCGCCTCAAAAGCCCACAAAATTGTCAGATTTTGTGCATTAAACCACTTGCTGTTTCTGCAAGTGCTAGTGCTCAATTTATTGTGAAAGGATTCAATCTTTTGCAGTCCAACACGAGGTTGCTCTGTGCTCTTGAAGGGAAATATTTGGTACAAGATAGTTGTTATAATTTGATTGACGGTGCTGATGTAGCCAATGAGCACCATGAGCTTCAGCATTTCAGCTTCTCATGTCACATACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTAGCAGAAAAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGTTGCTGAGACTGCTGATGACATCCAGATAAAATCCAAACTAATGGAAGAGAAGACTCGAGCATTGCATTTCATACAAGAAATGGGTTGGCTCCTTCATCGAAATCGTGTGAAAGTTAGGCTAGGGTCCATGGCGCCTGTCCAAGATCGATTCCATTTTAATCGGTTCATGTGGCTTGTCGGCTTCGCTATGGACCATGACTGGTGTGCTGTGATGAAGAAACTCTTGGACATTATCTTTGAGGGCACTGTTGATACAGGAGATCATGCCTCTGTTGAGTTTGCATTGTTAGAGATGGGTCTTCTGCACAATGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCACTTAAAGCTTCAGATGATGGAGATGGTAAAGAGAATCAAGTCAAGAAGTCCCCTGACAGGTTCTTATTCAGACCTGATACTATTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATGCATGGCTCAGAGAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGCAACTGAAGCATGGAAAGGTGCTAAGGACACGACAGGTTTGACACCCTATGACTATGCATCCTTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGAGGAAAACAAGCAAGACATGCAGAAGTCAGCATGTTCTTGATATCCCAGGTACCCTTGTTGATAGTAACACAAAGCAGAAGCAATCAGAAGGGCATCGGTCATCAAAAGTTTCAAGTTTGCAGACTGAGAAGATTGAAACAACAGCAACGCCACACCATTGTGGGCTATGCCAGCACAAGCTGGCGTATGGTGGTGTGAGAAGAACTACACTTGTTTATAGGCCGGCAATGCTGTCGATGGTGGCCATTGCAGCCGTGTGTGTCTGTGTGGCATTGCTCTTTAAAAGCTCACCCAAAGTCTATTATGTTTTCCAGCCCTTCAGCTGGGAATCATTGGAGTATGGGTCAATCTAA 3114 0.4335 MEAQLEGKSPYFYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCGSRQLFPTDPEILATADGTNNLSPAYDGVNLGEEKRELEKRRRGVIEEAGVEMNDGTGSGSLNLNLGGQVYPIIEGEEKSGKKTKIAASSSNRAVCQVEDCRTDLSNAKDYHRRHKVCDMHSKASQALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTHPDATVVNGGSVNEEKGSTYLLMSLLRILSNMHSNGSDNMRNQDVLSHLLRNLANLAGTINGRNIASLLDGSQDLLKAGTSGTMHNVPNTNSNGPEPSRPYSSSIKMDDGLIHHDPQESTLQCQMTPAHDMAKKCIASGSDGVVKLKSLSPSGPQSSNVLLSRDSLPTQSVAAGTTVGRIGLSNIDLNSVYDDVQDYVENPRNSHPPLPSGLGSHDHPLWVQCDSLRSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLGSSLKKLAASTDSFWRTGWIYTRVQHSVAFLYNGQVVLDVPLRLKSPQNCQILCIKPLAVSASASAQFIVKGFNLLQSNTRLLCALEGKYLVQDSCYNLIDGADVANEHHELQHFSFSCHIPNVTGRGFIEVEDNGLSSCSFPFIVAEKEICSEICKLENVIEVAETADDIQIKSKLMEEKTRALHFIQEMGWLLHRNRVKVRLGSMAPVQDRFHFNRFMWLVGFAMDHDWCAVMKKLLDIIFEGTVDTGDHASVEFALLEMGLLHNAVKRNCRPMVELLLKFVPLKASDDGDGKENQVKKSPDRFLFRPDTIGPAGLTPLHVAASMHGSENVLDALTDDPGMVATEAWKGAKDTTGLTPYDYASLRGYYSYIQLVQRKTSKTCRSQHVLDIPGTLVDSNTKQKQSEGHRSSKVSSLQTEKIETTATPHHCGLCQHKLAYGGVRRTTLVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01284 1037 SUPERFAMILY Ankyrin repeat 805 918 IPR036770 -
Cca08g01284 1037 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Cca08g01284 1037 SUPERFAMILY SBT domain 148 229 IPR036893 GO:0003677|GO:0005634
Cca08g01284 1037 MobiDBLite consensus disorder prediction 445 478 - -
Cca08g01284 1037 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1036 IPR044817 GO:0003677
Cca08g01284 1037 MobiDBLite consensus disorder prediction 449 478 - -
Cca08g01284 1037 MobiDBLite consensus disorder prediction 215 236 - -
Cca08g01284 1037 Gene3D - 141 211 IPR036893 GO:0003677|GO:0005634
Cca08g01284 1037 MobiDBLite consensus disorder prediction 942 962 - -
Cca08g01284 1037 MobiDBLite consensus disorder prediction 303 324 - -
Cca08g01284 1037 Pfam SBP domain 150 223 IPR004333 GO:0003677
Cca08g01284 1037 Gene3D - 778 924 IPR036770 -
Cca08g01284 1037 MobiDBLite consensus disorder prediction 303 328 - -
Cca08g01284 1037 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1036 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01284 Cca-Chr8 38530295 38542552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01284 1 1036 SBP-box Gene Family AT3G60030 47.198 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca08g01284 SBP 5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01284 - - gmx:100776125 1802.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01284 08 38530295 38542552 Cca08g01284 08 38530295 38542552 ECH
Cca11g02640 11 53664737 53671172 Cca08g01284 08 38530295 38542552 PCT