Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01281 ATGGCTCAGGAGACTTTCCTATTCACATCCGAATCGGTGAACGAGGGTCACCCTGACAAGCTCTGCGACCAGATCTCTGACGCTGTGCTCGATGCGTGCTTGGAGCAGGACCCAGACAGCAAGGTTGCTTGCGAAACCTGCACCAAGACCAACATGGTGATGGTGTTCGGTGAAATCACAACCAAGGCCAACGTGGACTACGAAAAGATCGTGCGTGACACATGCAGGAACATAGGATTTGTGTCTGACGACGTTGGTCTTGACGCCGACAACTGCAAGGTCCTAGTCAACATCGAGCAACAAAGCCCTGATATCGCTCAAGGTGTCCACGGTCACCTCACAAAGAGGCCAGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTACGCCACTGATGAAACCCCTGAGCTCATGCCCTTGAGCCACGTGCTAGCCACCAAGCTCGGTGCACGTCTCACTGAGGTTCGGAAGAACGGAACATGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTCACTGTTGAGTATTACAATGACAAGGGTGCCATGGTTCCAATCCGTGTCCACACTGTGCTGATTTCAACTCAGCATGATGAGACTGTGACAAACGATGAGATTGCTGCTGATCTCAAAGAGCATGTGATCAAGCCCGTGATTCCTGAGAAGTACCTTGATGAGAAAACCATTTTCCACCTTAACCCTTCTGGGAGGTTTGTGATTGGAGGGCCTCATGGTGATGCTGGCCTCACTGGGCGCAAGATCATCATTGACACCTATGGAGGGTGGGGTGCACATGGTGGTGGTGCCTTCTCAGGAAAGGACCCTACAAAAGTGGATAGGAGTGGTGCTTACATTGTGAGGCAGGCTGCAAAGAGCATTGTGGCAAATGGACTTGCTAGGAGGGCCATTGTGCAAGTTTCCTATGCCATTGGTGTGCCTGAGCCTCTTTCTGTGTTTGTGGACACTTATGGCACTGGGAAGATCCCTGACAAGGAGATCCTCAGCATTGTGAAGGAGAATTTTGACTTCAGGCCTGGTATGATCTCCATCAACCTTGATCTCAAGAGAGGTGGAAATGGCAGGTTCTTGAAGACTGCTGCTTATGGACACTTTGGAAGAGATGACCCTGACTTCACATGGGAAGTGGTCAAGCCACTCAAGGGTGACAAGGTATCTTCCTAA 1188 0.5109 MAQETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRAIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILSIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKGDKVSS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01281 395 SUPERFAMILY S-adenosylmethionine synthetase 117 241 IPR022636 GO:0004478|GO:0006556
Cca08g01281 395 SUPERFAMILY S-adenosylmethionine synthetase 242 388 IPR022636 GO:0004478|GO:0006556
Cca08g01281 395 Pfam S-adenosylmethionine synthetase, N-terminal domain 6 103 IPR022628 GO:0004478|GO:0006556
Cca08g01281 395 Hamap S-adenosylmethionine synthase [metK]. 4 395 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca08g01281 395 SUPERFAMILY S-adenosylmethionine synthetase 5 111 IPR022636 GO:0004478|GO:0006556
Cca08g01281 395 ProSitePatterns S-adenosylmethionine synthase signature 1. 121 131 IPR022631 GO:0004478|GO:0006556
Cca08g01281 395 ProSitePatterns S-adenosylmethionine synthase signature 2. 268 276 IPR022631 GO:0004478|GO:0006556
Cca08g01281 395 Pfam S-adenosylmethionine synthetase, central domain 119 240 IPR022629 GO:0004478|GO:0006556
Cca08g01281 395 CDD S-AdoMet_synt 7 386 - -
Cca08g01281 395 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 4 394 - -
Cca08g01281 395 Gene3D - 119 383 - -
Cca08g01281 395 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 4 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca08g01281 395 PIRSF MAT 1 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca08g01281 395 Pfam S-adenosylmethionine synthetase, C-terminal domain 242 383 IPR022630 GO:0004478|GO:0006556
Cca08g01281 395 Gene3D - 13 281 - -
Cca08g01281 395 TIGRFAM metK: methionine adenosyltransferase 7 388 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca08g01281 395 Gene3D - 6 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01281 Cca-Chr8 38458032 38460347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01281 K00789 - gmx:100787994 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01281 08 38458032 38460347 Cca08g01281 08 38458032 38460347 ECH
Cca08g01281 08 38458032 38460347 Cca03g02731 03 48652756 48665651 ECH
Cca08g01281 08 38458032 38460347 Cca02g01386 02 32356542 32357299 ECH
Cca08g01281 08 38458032 38460347 Cca02g01324 02 31553981 31557011 ECH