Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01278 ATGATTTTTTCCTGTAGAACTTTTAGAAGCAAGGGGACAATTTTTTACCGGATTCAAATCAAAGAAatattaaaatatatatatatatatTTCGACGTCATCGTCAAGATCAAAAACGCCCTCGAGCTCTCCTGCCCCGGCATCGTCTCCTGCTCCGACATCGTCGCCCAGGCCACCCGCGACCTCGTCAAGATGGTCGGCGGTCCCTTCTACCCCGTCAAGCTCGGCCGCAAAGACAGCACCGAATCCGACGCCGCCAAGGTCGACGCTAGCCTTCCCACTCCCTACATGAGCATGGACCAAATCATGGACAAGTTCACCTCCAAGGGGTTCTCCATCAAGGACATGGTTTCCCTCACCGGCGCTCACACCATCGGCTTCACTCACTGCAAGGAGTTCATCCACCGTATCTACAACTTCAGCTCCAGCTCCGATTCTGACCCCTCCATGCACCCTAAGCTGGTGGCCGGCCTCAGGTCCGTTTGCCAGAACTACACCCAGGACTCCTCCATGGCCGCCTTCAACGACGTTAGGTCACCGGGGAAGTTCGACAATGCTTATTACCAGAACTTGATCAAAGGGTTAGGGCTCTTGTCTTCTGATTCTCTTCTGGCTGTGGACCCCCGGACCCGCCCCATCGTTGAGCTCTACGCCAATGACCAACAAGCCTTCTTCACTGACTTTGCCTACGCCATGGAGAGGCTTTCTTTGCTCGGAGTCAGAACTGGGAAGAAGGGTGAGGTCAGGAGCAGATGTGACCAGTTCAACTCTATTCCTGCATAA 783 0.5275 MIFSCRTFRSKGTIFYRIQIKEILKYIYIYFDVIVKIKNALELSCPGIVSCSDIVAQATRDLVKMVGGPFYPVKLGRKDSTESDAAKVDASLPTPYMSMDQIMDKFTSKGFSIKDMVSLTGAHTIGFTHCKEFIHRIYNFSSSSDSDPSMHPKLVAGLRSVCQNYTQDSSMAAFNDVRSPGKFDNAYYQNLIKGLGLLSSDSLLAVDPRTRPIVELYANDQQAFFTDFAYAMERLSLLGVRTGKKGEVRSRCDQFNSIPA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01278 260 ProSitePatterns Peroxidases proximal heme-ligand signature. 115 125 IPR019793 -
Cca08g01278 260 SUPERFAMILY Heme-dependent peroxidases 30 256 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 48 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 29 42 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 67 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 230 243 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 174 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 114 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Plant peroxidase signature 190 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 Gene3D Peroxidase, domain 2 93 235 - -
Cca08g01278 260 Pfam Peroxidase 31 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Haem peroxidase superfamily signature 115 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Haem peroxidase superfamily signature 49 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PRINTS Haem peroxidase superfamily signature 67 79 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PANTHER - 31 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 ProSiteProfiles Plant heme peroxidase family profile. 31 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g01278 260 PANTHER PEROXIDASE 41 31 258 - -
Cca08g01278 260 Gene3D - 31 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01278 Cca-Chr8 38260070 38260852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01278 31 258 Peroxidase AT4G17690 56.140 2.13e-92 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01278 K00430 - gmx:100795676 399.438