Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01274 ATGGAGCAGTTGAAACTGGTTGCAGATTCTAAAGCCAAAGAGGATAATCCTTTGGGGAACAAGCCAAAAAATAACAATGTGCTTGAGTCTTCGGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGAAGCATGTCGGCCTATAATTGAAGAAGCACCTGTCTTCTATCCGACTATTGAAGAGTTTGAAGACACACTCAGTTACATAGCAAAGATTCGGCCCCTAGCTGAACACCATGGCATATGTAGGATTGTTCCACCAGCTTGCTGGACTCCACCCTGTCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAACAAATTGATTTGCTTCAAAATAGGGAACCTATGAGGAAAAAAAGTAGGGGAAGGAAAAGAAAACGTAGAAAGCATTCCAAAACAGGGACATGTAGGAGGAAGCCTGCCAATGCTTCTGAGTCTGAAGAGAAATTTGGATTCCAATCAGGGTCAGACTTCACTCTTAAAGACTTTCAGCAATATGCTAATTTTTTTAAAGAGTGCTACTTTGGGTTGAGAGATGCCAATGGAGACAGAATAGCCAACGACAGCAACCCTGAGAGGAAATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGTATAATTGAACAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGATTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGATTCAGATCAATATGCTCTGTCGGGCTGGAATCTGAATAATTTCCCGCGGCTGCCAGGTTCTGTACTAAGTTATGAGGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTAAACTATTTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTCCAGCTTTGGAAAATGTAATGAGGAAGCACTTGAGTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATATCATTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTCAATGTGGCTCCTATTGATTGGTTAATGCATGGTCAGAATGCTGTTGAGCTTTACAGTTTACAATGTCGTAAGACATCATTGTCACATGACAAACTGTTATTTGGATCAGCACTGGAAGCTGTGCGAGCCCTTGCAGGGTTAGCTCTTGGAAAGGAAACTCCAAAAAATTTGAAATGGAGTAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAGTCAAGGCAAGGATAAAAATGGAAGAAGAAAGGCTAGACTGTCTTCCAACTCATCTTAAGTCTCTGAAGATGAATAGTGACTTTGATTTGTACAAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTATGGGTTGTGAGTGCTCTCCCGACATATATTCTTGTCTTAGGCATGTTAATTTATTCTGTTCGTGCGAAATGGAGAAAAAATTTGTTCTGCTTCGATATACTATAAATGACCTCAATATGTTGGTTGGAGCATTAGAAGGAGAATCAGCTGCTATTGAGTTGTGGGCAAATAAAAACTTTGGAATGGTTTCTGCCAATGCCAAAGAGGTTTGGATAGATAAAACAGATGTTGAGCAAGATATTTACAAAAACAAGGATTATGAAGAAAGGGAAAGCTCAGCTGGCTGTTTAGGAACGAAGGATAGGTCAAACTTAAACACACCTAGTAGTCCTACACCTACGAGTCATATTACTTCAGAAATAGGGCAGTCTGAGTCACACCCTGTAACTTCTAGGGCCCCATATGACAGTATTGATAGTCATAATGACAATAATGATGATAAAAAATTGGTCACAGAAAATGAAGATAAAGTAGATCAGGCAGGTCCTCTGGATTTGAATGTTGATGTTACCTCTGGTGAAAATGAAAATCATTTGCGGCATATTTCTGATAACCATCATGATGAAGTTGTTTCAGTAAAGGAAAAGGTATGTTGTTCAGAGACCAGAATGGAAGAAGACAATGTGAAACTTGGTGTTGAGGGCAACATACAAAACTCATTTTCTGTTCTAAAGACTGATTTTTCATCACCATGTTCTAGGGATGCTCACAATTATTGTACATTTGATGGTGGAAAAATTGAGCTGGATCTGCAAACAGATTCAGATTCAGGAAAGCTGCAAAACAATCTATTTAAAAGGGCGGTCATAGATACCACAAGTACTAGTATGTTTTTGACAGAGGAAAGCTGCTTAATGCAAATGTTTGGTACTTCTGTCGAGCCTGTAAGTTTGGGATCTGTTGTTCACGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGAGTTAACTTCTATAGCATTATTGATCCAACAAGAATCTGTAGCTATATTTCTGAAGTTATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCATGGAAGAATGTCCAAGTGAGGCTTTCACAGATATCTCAGCAGATAGTTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAGATAACGAGGAGAAGGAGTCTAGGTGAACTAGAACTTCCTCCCTTAGAGCTCCTGAAAAGCATTAGCGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGTCATCGAAGCCCAAGATCCAAGTCATTTGTGTGTAGAGTACTGGAATCACAAAGTTGCCTCTTCAGGCAGCACATATGGTTCCAGTAGCTATTTAGGTAATACCAATACCAAAATTTTTGGTATCGATTTGATTAAGCAGGAAAATTATAACATGCTTGAAAAGATGAAACCAATACTACTAAGGGCAAGTCCTGATGAGTTAAGCACAATGCATAAGCTACTCAGCTCTGATGCACAGTGCTGTGAGTGGAAAGTGGCATTGATAGCACTGATGGATGAGATTCGGAAAGCTTGTCAATAA 3126 0.4053 MEQLKLVADSKAKEDNPLGNKPKNNNVLESSDSLRNRKISARWDPVEACRPIIEEAPVFYPTIEEFEDTLSYIAKIRPLAEHHGICRIVPPACWTPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKHSKTGTCRRKPANASESEEKFGFQSGSDFTLKDFQQYANFFKECYFGLRDANGDRIANDSNPERKWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKASSLTKSDSDQYALSGWNLNNFPRLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPALENVMRKHLSDLFEEQPNLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRALAGLALGKETPKNLKWSSVCGKDGDLTKAVKARIKMEEERLDCLPTHLKSLKMNSDFDLYKERECFSCFYDLHLSAMGCECSPDIYSCLRHVNLFCSCEMEKKFVLLRYTINDLNMLVGALEGESAAIELWANKNFGMVSANAKEVWIDKTDVEQDIYKNKDYEERESSAGCLGTKDRSNLNTPSSPTPTSHITSEIGQSESHPVTSRAPYDSIDSHNDNNDDKKLVTENEDKVDQAGPLDLNVDVTSGENENHLRHISDNHHDEVVSVKEKVCCSETRMEEDNVKLGVEGNIQNSFSVLKTDFSSPCSRDAHNYCTFDGGKIELDLQTDSDSGKLQNNLFKRAVIDTTSTSMFLTEESCLMQMFGTSVEPVSLGSVVHGKLWCSKHAIYPKGFKSRVNFYSIIDPTRICSYISEVIDAGFLGPLFKVTMEECPSEAFTDISADSCWESVLKRLHHEITRRRSLGELELPPLELLKSISGHRMFGFLLPSIIQVIEAQDPSHLCVEYWNHKVASSGSTYGSSSYLGNTNTKIFGIDLIKQENYNMLEKMKPILLRASPDELSTMHKLLSSDAQCCEWKVALIALMDEIRKACQ 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01274 1041 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1040 - -
Cca08g01274 1041 SUPERFAMILY Clavaminate synthase-like 259 443 - -
Cca08g01274 1041 MobiDBLite consensus disorder prediction 128 147 - -
Cca08g01274 1041 Gene3D - 813 953 - -
Cca08g01274 1041 ProSiteProfiles FYR domain FYRN motif profile. 809 867 IPR003888 GO:0005634
Cca08g01274 1041 SMART fyrc_3 873 973 IPR003889 GO:0005634
Cca08g01274 1041 MobiDBLite consensus disorder prediction 663 686 - -
Cca08g01274 1041 MobiDBLite consensus disorder prediction 621 662 - -
Cca08g01274 1041 MobiDBLite consensus disorder prediction 120 159 - -
Cca08g01274 1041 MobiDBLite consensus disorder prediction 1 18 - -
Cca08g01274 1041 MobiDBLite consensus disorder prediction 616 691 - -
Cca08g01274 1041 Pfam F/Y-rich N-terminus 820 864 IPR003888 GO:0005634
Cca08g01274 1041 Pfam F/Y rich C-terminus 871 959 IPR003889 GO:0005634
Cca08g01274 1041 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Cca08g01274 1041 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1040 - -
Cca08g01274 1041 ProSiteProfiles FYR domain FYRC motif profile. 869 959 IPR003889 GO:0005634
Cca08g01274 1041 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g01274 1041 SMART JmjN_1 55 96 IPR003349 -
Cca08g01274 1041 Pfam JmjC domain, hydroxylase 291 407 IPR003347 -
Cca08g01274 1041 Pfam jmjN domain 57 90 IPR003349 -
Cca08g01274 1041 SMART cupin_9 258 424 IPR003347 -
Cca08g01274 1041 Pfam C5HC2 zinc finger 513 563 IPR004198 -
Cca08g01274 1041 SMART fyrn_3 823 867 IPR003888 GO:0005634
Cca08g01274 1041 ProSiteProfiles JmjC domain profile. 258 424 IPR003347 -
Cca08g01274 1041 Gene3D Cupin 41 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01274 Cca-Chr8 38019955 38033507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01274 64 1036 JUMONJI Transcription Factor Family AT4G20400 46.653 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca08g01274 JmjC 2.1e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01274 - - gmx:100801775 1761.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01274 08 38019955 38033507 Cca08g01274 08 38019955 38033507 ECH