Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01272 ATGAATAGGGCAAGTACCCCTCAAGCCAATGAACAGGTTGAGTACCCTTCAGTTATGAGGAGCGTGTGTAACGGGTGTAGGAACATCCTTGTTTACCCTTTGGGAGCATCTAATGTTTGCTGTGCAATTTGCAACACCATCAATTCTGTTCCTCCTCCTCGAATGGAAATGTCACAACTTCATTGTGGAGGCTGTAGGACATTTCTAGTGTACCCGCGTCGTGCTGCAAGTGTGACATGTCCTTACTGTCACGCTATTAACCTTGCACCAGAATTAAATCAAGTAAGCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCAATTTGTCACTTTATTACTAATGTCACTATGACCAATGAAAGGCTTCGCATTCCTGTATTGAGATCAAATGGAACAGTACCTTCTAATTCATCGGTATGCTTTTCTCTTTTTCTTTTGGTGATTCCGTGA 486 0.4362 MNRASTPQANEQVEYPSVMRSVCNGCRNILVYPLGASNVCCAICNTINSVPPPRMEMSQLHCGGCRTFLVYPRRAASVTCPYCHAINLAPELNQVSHVHCGNCRTTLMYPYGAPSVKCAICHFITNVTMTNERLRIPVLRSNGTVPSNSSVCFSLFLLVIP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01272 161 PANTHER LSD1-LIKE PROTEIN 22 153 - -
Cca08g01272 161 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 22 50 IPR005735 -
Cca08g01272 161 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 59 88 IPR005735 -
Cca08g01272 161 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 97 126 IPR005735 -
Cca08g01272 161 PANTHER PROTEIN LSD1 22 153 IPR040319 -
Cca08g01272 161 Pfam LSD1 zinc finger 23 47 IPR005735 -
Cca08g01272 161 Pfam LSD1 zinc finger 100 124 IPR005735 -
Cca08g01272 161 Pfam LSD1 zinc finger 62 86 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01272 Cca-Chr8 37989226 37992787 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Cca08g01272 zf-LSD1 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01272 - K12191 ccaj:109789943 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01272 08 37989226 37992787 Cca08g01272 08 37989226 37992787 ECH