Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g01272 | ATGAATAGGGCAAGTACCCCTCAAGCCAATGAACAGGTTGAGTACCCTTCAGTTATGAGGAGCGTGTGTAACGGGTGTAGGAACATCCTTGTTTACCCTTTGGGAGCATCTAATGTTTGCTGTGCAATTTGCAACACCATCAATTCTGTTCCTCCTCCTCGAATGGAAATGTCACAACTTCATTGTGGAGGCTGTAGGACATTTCTAGTGTACCCGCGTCGTGCTGCAAGTGTGACATGTCCTTACTGTCACGCTATTAACCTTGCACCAGAATTAAATCAAGTAAGCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCAATTTGTCACTTTATTACTAATGTCACTATGACCAATGAAAGGCTTCGCATTCCTGTATTGAGATCAAATGGAACAGTACCTTCTAATTCATCGGTATGCTTTTCTCTTTTTCTTTTGGTGATTCCGTGA | 486 | 0.4362 | MNRASTPQANEQVEYPSVMRSVCNGCRNILVYPLGASNVCCAICNTINSVPPPRMEMSQLHCGGCRTFLVYPRRAASVTCPYCHAINLAPELNQVSHVHCGNCRTTLMYPYGAPSVKCAICHFITNVTMTNERLRIPVLRSNGTVPSNSSVCFSLFLLVIP | 161 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g01272 | 161 | PANTHER | LSD1-LIKE PROTEIN | 22 | 153 | - | - | |
Cca08g01272 | 161 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 22 | 50 | IPR005735 | - | |
Cca08g01272 | 161 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 59 | 88 | IPR005735 | - | |
Cca08g01272 | 161 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 97 | 126 | IPR005735 | - | |
Cca08g01272 | 161 | PANTHER | PROTEIN LSD1 | 22 | 153 | IPR040319 | - | |
Cca08g01272 | 161 | Pfam | LSD1 zinc finger | 23 | 47 | IPR005735 | - | |
Cca08g01272 | 161 | Pfam | LSD1 zinc finger | 100 | 124 | IPR005735 | - | |
Cca08g01272 | 161 | Pfam | LSD1 zinc finger | 62 | 86 | IPR005735 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g01272 | Cca-Chr8 | 37989226 | 37992787 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Cca08g01272 | zf-LSD1 | 3.4e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g01272 | - | K12191 | ccaj:109789943 | 288.5 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca08g01272 | 08 | 37989226 | 37992787 | Cca08g01272 | 08 | 37989226 | 37992787 | ECH |