LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01257	atGGATCGAGAAAATGCCGACGGCGACATTGAAGGCGGTGGCGGCGACGACGGTTTCCGCTCCCCGCTCGGCCGCAAGTATCGCCCTGTGTTGGCCAACGATCGCGCGGTGCTCGAAATGTCTTCCGTCGATCCTGGATCTTCTTCGTCTTCGTCCTCGGCATTTGCAGATCAACCTCCTAATATTAGAAAAATAAAGACGAGTGTGAATGGGAGTTCGGATGCCAAGGAGGGGAATGATACTCATCAACAGCAGCCTAATGGATCCCAGCAGCAAGAATCTAAACTGGAATTGTTCGGTTTTGATTCCCTTGTCAACATTCTTGGTCTCAAAAGTATGACTGGTGAGCATGTTGCACAGCCATCTAGTCCTAGAGATGGTGAGGATATATCCATCACTGCTGGGCTGCCAAGGCCTGCTGCTCCCAAACTGGGTACACTGATGGGTGTATTCATACCATGTATACAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCCTGGATTGTTGGTATGGCTGGCATAGGAGAGACATTGTTGCTTGTTTCTTTATGTGGCACTTGTACGTTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGGGGACCTTACTATCTCATAGGTCGTGCCCTTGGTCCAGAAGTTGGAGTTAGCATTGGTCTATGCTTCTTCCTGGGAAATGCTGTTGCTGGAGCTCTTTACGTATTGGGAGCAGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGGATCTTTAGAGAGACTATCACATCAATTAATGGTACTGCAATTGCACAACCAATACAGAGTCCAAGTTCTCATGACTTGCAAATATATGGGATTGTTGTGACTATTCTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCGCCTGCTTTTCTCATACCTGTTTTATTCTCAGTCGTTTGCATATTTTTGGGAATTCTTTTGGCAAGGAAGGATCATCCACAAGAGGGAATTACTGGGTTGAGTTCAGAGACATTCAGAGATAATTGGAGTTCAGATTATCAAAAGACTAATGATGCTGGAATTCCAGAATCTGATGGCTCAGTAACCTGGAATTTCAATTCATTGGTAGGCCTCTTTTTCCCTGCTGTGACTGGAATAATGGCAGGTTCTAATCGATCATCCTCTCTGAAAGATACTCAGCGATCAATTCCTGTTGGAACTTTAGCTGCAACTCTTTCAACTACTACTCTTTATCTTGTTTCTTTGATGTTATTTGGCTCTGTTGCCACTAGAGAGAAGCTTTTAACTGACAGGTTACTTACAGCTACAATTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACTATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCGCGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTATTTTGAACTACTTTAAAGTTGCGGATGGCAGTGAACCACATGTTGCTACCCTTTTTACTGCTTTCTTATGTGTTGGGTGTGTCATTATTGGGAATCTGGATCTTATCACTCCAACTGTAACTATGTTTTTCCTTCTATGTTACACTGGTGTCAACTTATCGTGCTTCCTTCTCGATCTTCTAGATGCCCCTAGTTGGCGTCCTCGATGGAAATTTCACCATTGGAGTTTGTCCCTTGTGGGAGCTTTACTTTGCATCGTGATTATGTTCCTAATCTCTTGGTCATTCACCGTGGTGTCTTTGGCCCTTGCGAGCCTCATATATAAGTATGTGAGCATCAAAGGAAAGGCTGGGGACTGGGGAGATGGTTTCAAAAGTGCTTATTTTCAACTAGCACTTCGTAGCCTTCGATCCCTAGGAGCAAGCCAAGTTCACCCAAAGAATTGGTATCCAATTCCACTAATATTTTGCCGACCCTGGGGCAAACTGCCAGAAAATGTTCCATGTCATCCCAAACTTGCAGATTTTGCTAACTGTATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTGGATGGTGATTACCATGAATGTGCTGAAGATGCCAAGGCTGCTTGTAAACAACTTAGCACCTACATTGATTACAAAAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCTAACATGTCTGAAGGCTTCCGTGGCATTATTCAGACAATGGGCCTTGGCAATCTGAAGCCAAACATTGTGGTGATGCGTTACCCAGAAATCTGGCGTAGGGAAAACTTGACAGAAATCCCTGCCACCTTTGTTGGGATAATTAATGATTGCATCGTTGCAAACAAGGCTGTAGTTATAGTTAAGGGTCTTGATGAATGGCCAAACGAGTACCAGAGACAGTATGGCACAATTGATTTGTATTGGATTGTAAGAGATGGTGGTCTCATGCTGCTTCTCTCTCAACTCCTTCTTACCAAGGCAAGTTTTGAGAATTGTAAGATTCAGGTCTATTGTATTGCAGAAGAGGATGGAGATGCAGAAGGGCTGAAAACTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCAGAAGTGTTTGTCATAACAATGAAATGGGATGCACAGATGGATGGTGGTGGTGGGTCTCCGCAAGATGAGTCGTTGGATGCATTTGCTAGTGCTCAGCATAGAATTACCGATTACTTGACCCAAATGAAGGAGACGTCGAAGAGAGAGGGGACTCCTTTAATGGCAGATGGTAAGGCCGTGGTTGTGAACGAGAAGCAGGTCGAGAAGTTTCTTTACACAACACTTAAGCTCAATTCAACGATTTTGAGATATTCAAGAATGGCTGCTGTTGTGTTGGTAAGTCTGCCTCCACCCCCTGTGAGCCATCCAGCATATTTCTACATGGAGTACATGGATCTGTTGCTGGAGAATGTACCAAGGATTTTGATTGTAAGAGGATACCGTAGAGACGTTGTAACTCTATTCACATAG	2979	0.4371	MDRENADGDIEGGGGDDGFRSPLGRKYRPVLANDRAVLEMSSVDPGSSSSSSSAFADQPPNIRKIKTSVNGSSDAKEGNDTHQQQPNGSQQQESKLELFGFDSLVNILGLKSMTGEHVAQPSSPRDGEDISITAGLPRPAAPKLGTLMGVFIPCIQSILGIIYYIRFSWIVGMAGIGETLLLVSLCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPSAGIFRETITSINGTAIAQPIQSPSSHDLQIYGIVVTILLCFIVFGGVKMINRVAPAFLIPVLFSVVCIFLGILLARKDHPQEGITGLSSETFRDNWSSDYQKTNDAGIPESDGSVTWNFNSLVGLFFPAVTGIMAGSNRSSSLKDTQRSIPVGTLAATLSTTTLYLVSLMLFGSVATREKLLTDRLLTATIAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCVGCVIIGNLDLITPTVTMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKAACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKASFENCKIQVYCIAEEDGDAEGLKTDVKKFLYDLRMQAEVFVITMKWDAQMDGGGGSPQDESLDAFASAQHRITDYLTQMKETSKREGTPLMADGKAVVVNEKQVEKFLYTTLKLNSTILRYSRMAAVVLVSLPPPPVSHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT	992

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01257	992	Pfam	Amino acid permease	149	625	IPR004841	GO:0016020\|GO:0055085
	Cca08g01257	992	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	18	991	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Cca08g01257	992	PANTHER	CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1	18	991	-	-
	Cca08g01257	992	MobiDBLite	consensus disorder prediction	1	26	-	-
	Cca08g01257	992	MobiDBLite	consensus disorder prediction	42	92	-	-
	Cca08g01257	992	TIGRFAM	2a30: K-Cl cotransporter	83	992	IPR004842	GO:0006811\|GO:0015377\|GO:0016021
	Cca08g01257	992	MobiDBLite	consensus disorder prediction	39	92	-	-
	Cca08g01257	992	Pfam	Solute carrier family 12	659	780	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Cca08g01257	992	Pfam	Solute carrier family 12	791	991	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Cca08g01257	992	Gene3D	Amino acid/polyamine transporter I	142	607	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01257	144	992	Inorganic Solute Cotransporters	AT1G30450	83.314	0.0	1460

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01257	K14427		-	gmx:100795205	1784.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca08g01257	08	37511807	37537047	Cca08g01257	08	37511807	37537047	ECH