Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01246 ATGCGTGCACGATACAACCATTGGCGGCGCAATGGGAAACTTACACGTGGTGCTGCAACGAATATGCGTTTCTCATTCAGCCGCAGAAAGAACACGGGCCTATGCGTCCTGTCCGGTTCGGGAACCGTCACCAATGTTACTCTCCATCAACCCTCCGTCACCCCCGGCGCCACCGTCACTTTCCACGGCTACTTTGATGTCCTCTCCCTCTCTGCCACGCTCCTCCTCCACGACTCGCCGGCAATCGCGGTCTCCGCCTTCGTCGTCTCGCTCGCCGGCCCGCAGAGAGGGAAGAACCAGGAAGCCAGAAACATTCCGAAAAAAATTAAAAAACGTGAACTTCGATGTAGATGTGAATTTTAA 363 0.5482 MRARYNHWRRNGKLTRGAATNMRFSFSRRKNTGLCVLSGSGTVTNVTLHQPSVTPGATVTFHGYFDVLSLSATLLLHDSPAIAVSAFVVSLAGPQRGKNQEARNIPKKIKKRELRCRCEF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01246 120 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 95 IPR014476 GO:0003680
Cca08g01246 120 Gene3D - 24 97 - -
Cca08g01246 120 Pfam Plants and Prokaryotes Conserved (PCC) domain 26 95 IPR005175 -
Cca08g01246 120 CDD DUF296 25 95 IPR005175 -
Cca08g01246 120 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 25 95 - -
Cca08g01246 120 SUPERFAMILY AF0104/ALDC/Ptd012-like 26 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01246 Cca-Chr8 36836664 36838543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01246 26 95 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 57.895 1.80e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01246 - - ccaj:109810856 116.316