Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01242 ATGGATTCTTTTGAGCCAGATGGAAATGGGAACGGGAAGGAGGAGCCATTGCCACCACCCCCTCCTGTTGTCCCCTCTGATGTTGTACCTCTCAAAGCGGAAGAGGTGCTCTCTACCCCTGTTGAACCTGCTAAGAAAAAGGCTTCCCGTGCTCCAATAGCTAGACGTGGTCTGGGATCCAAAGGAATGAAAATACAGCTACAAACCAACCACTTCAAAGTTAATGTCTCTAAAAATGATGGACATTTCTTCCATTATAGTGTGGCTTTTTCTTATGAAGATGGACGCCCTGTTGAAGGTAAGGGTGCAGGGAGGAAGATAATGGACAGGGTGAAGGAGACATATCATTCTGACTTAAATGGCAAGGACTTTGCATATGATGGGGAGAAAAGTTTGTTTACTATTGGCTCGCTTCCTCAAAACAAGCTTGAGTTTGAAGTTGTTCTTGAGGATGTCACATCAAACAGGAATAATGGAAATTGCAGCCCTAATGGTCATGGAGATAATGAAAGTGACAGAAAGAGGATGCGGCGTCCATACCGAGCAAAGACATTCAAAGTAGAGATAAGCTTTGCTGCAAAAATTCCAATGCAGGCCATTGGCAATGCCTTGCGTGGGCAGGAGACAGAGAATTTCCAAGAAGCCATTAGAGTTCTTGATATCATTTTGAGGCAGCATGCTGCTAAGCAAGGTTGCTTACTTGTACGCCAATCTTTCTTCCACAATGATCCAAATAATTTTGCTGATGTAGGAGGTGGTGTCCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTTAACATAGATGTGTCGACTACTATGATAATTACTCCTGGGCCTGTGGTTGACTTTTTAATTGCTAATCAAAATGTGAGAGATCCTTTTCAACTTGACTGGGCTAAGGCTAAAAGGACCCTAAAAAATCTGAGGATTAAAACTAGGCCATCTAATCAAGAATTCAAAATTACTGGGCTCAGTGAACTTCCATGCAGGGAGCAGACTTTTACTTTGAAGGGTAAAGGTGGCATGGATGGAGAAGACAGTACGGAGGAAATAACTGTTTATGATTATTTTGTTAATGTTCGAAAGATAGATCTACGATACTCTTCGGACCTTCCATGTATCAATGTTGGCAAGCCTAAACGGCCAACATTTTTTCCTATTGAGCTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCTCTGTCCACACTTCAAAGAGCTTCATTAGTGGAGAAGTCCAGGCAGAAACCACAAGAAAGGATGAGGGTTTTGTCTGACGCTCTAAGAAGCAGCAACTATGGCTCTGAACCTTTGCTCCGCAATTGTGGAATTTCTATAAGCACTGGCTTCACTGAAGTGGAGGGTCGAGTCTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGATTTCAATCCAAGGAATGGGCGGTGGAATTTTAGCAACAAGAGATTTGTGGAACCGTCTAAGATAGAAAGATGGGCTGTGGCAAACTTTTCTGCACGCTGTGATGTACGAGCACTTATACGGGACCTGATTAGAATTGGAGACATGAAAGGAATTACAATAGAACAACCATTTGATGTGTTTGATGAGAATCCTCAGTTTAGACGTGCCCCACCTATGGTTAGGGTGGAGAAGATGTTTGAAACCATTCAGTCTAAACTTCCTGGGGCTCCTCAGTTCCTTCTATGTTTGCTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCATTAATCAGTGTATGTGTCCTACAAGGGTCAATGACCAGTACCTGACCAATGTTATGTTGAAAATCAATGCCAAGCTTGGTGGATTGAATTCATTGTTGGGCGTTGAACATTCTCCTTCTCTTCCTGTTGTTTCCAAAGCCCCGACCCTCATTCTGGGCATGGATGTGTCACATGGCTCACCAGGGCAGACTGACATTCCTTCAATTGCTGCGGTGGTCAGCTCTAGACACTGGCCTCTGATATCAAAATATAGGGCATGTGTTCGTACCCAATCAGCAAAGGTTGAAATGATAGATAATTTGTTCAAGCGAGTATCTGAAAAGGAAGATGAAGGCATCATAAGGGAACTTTTGCTTGATTTCTATACAACTTCTGGGAGGAGAAAACCAGAAAACATAATCATATTCAGGGATGGTGTTAGTGAGTCGCAGTTCAATCAAGTTCTTAATATTGAACTTGATCAAATCATTGAGGCTTGCAAATTTCTTGATGAAAATTGGGAGCCAAAATTTGTGGTAATTGTGGCTCAGAAGAATCACCACACCAGGTTTTTCCAGCCCAACTCTCCTGACAATGTCCCACCTGGAACTGTTATCGACAATAAAATTTGCCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATTGGTACTAGTAGGCCTACCCATTACCATGTGCTGCACGATGAGGTTGGTTTCTCTCCAGATGAGATGCAGGAGCTTGTCCATTCATTATCATACGTGTATCAGAGGAGCACTACTGCCATTTCTGTTGTTGCTCCAATATGTTATGCACACTTGGCTGCAACTCAGCTGGGGCAGTTCATGAAATTTGAGGACAAATCTGAGACATCTTCAAGCCATGGTGGACTGAGTGGTGCTGGTGCTGTTCCTGTCCCTCAGTTGCCTCCGTTGCAGGAAAATGTCCGCAACACAATGTTCTTTTGTTGA 2757 0.4291 MDSFEPDGNGNGKEEPLPPPPPVVPSDVVPLKAEEVLSTPVEPAKKKASRAPIARRGLGSKGMKIQLQTNHFKVNVSKNDGHFFHYSVAFSYEDGRPVEGKGAGRKIMDRVKETYHSDLNGKDFAYDGEKSLFTIGSLPQNKLEFEVVLEDVTSNRNNGNCSPNGHGDNESDRKRMRRPYRAKTFKVEISFAAKIPMQAIGNALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLIANQNVRDPFQLDWAKAKRTLKNLRIKTRPSNQEFKITGLSELPCREQTFTLKGKGGMDGEDSTEEITVYDYFVNVRKIDLRYSSDLPCINVGKPKRPTFFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDALRSSNYGSEPLLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDFNPRNGRWNFSNKRFVEPSKIERWAVANFSARCDVRALIRDLIRIGDMKGITIEQPFDVFDENPQFRRAPPMVRVEKMFETIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPTRVNDQYLTNVMLKINAKLGGLNSLLGVEHSPSLPVVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRHWPLISKYRACVRTQSAKVEMIDNLFKRVSEKEDEGIIRELLLDFYTTSGRRKPENIIIFRDGVSESQFNQVLNIELDQIIEACKFLDENWEPKFVVIVAQKNHHTRFFQPNSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLHDEVGFSPDEMQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSGAGAVPVPQLPPLQENVRNTMFFC 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01242 918 Pfam Piwi domain 572 879 IPR003165 GO:0003676
Cca08g01242 918 MobiDBLite consensus disorder prediction 13 27 - -
Cca08g01242 918 Gene3D - 638 918 IPR036397 GO:0003676
Cca08g01242 918 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 917 - -
Cca08g01242 918 Gene3D - 466 632 - -
Cca08g01242 918 Pfam Argonaute linker 2 domain 428 474 IPR032472 -
Cca08g01242 918 Pfam PAZ domain 289 418 IPR003100 GO:0005515
Cca08g01242 918 Gene3D paz domain 279 406 - -
Cca08g01242 918 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 917 - -
Cca08g01242 918 Pfam Argonaute linker 1 domain 235 283 IPR014811 -
Cca08g01242 918 ProSiteProfiles Piwi domain profile. 571 879 IPR003165 GO:0003676
Cca08g01242 918 SMART DUF1785_2 233 285 IPR014811 -
Cca08g01242 918 Pfam N-terminal domain of argonaute 64 223 IPR032474 -
Cca08g01242 918 SMART Piwi_a_2 571 879 IPR003165 GO:0003676
Cca08g01242 918 Pfam Mid domain of argonaute 481 534 IPR032473 -
Cca08g01242 918 SUPERFAMILY PAZ domain 280 442 IPR036085 GO:0005515
Cca08g01242 918 CDD Piwi_ago-like 446 873 IPR045246 -
Cca08g01242 918 CDD PAZ_argonaute_like 285 401 - -
Cca08g01242 918 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g01242 918 MobiDBLite consensus disorder prediction 156 176 - -
Cca08g01242 918 ProSiteProfiles PAZ domain profile. 310 402 IPR003100 GO:0005515
Cca08g01242 918 SUPERFAMILY Ribonuclease H-like 555 877 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01242 Cca-Chr8 36511553 36521599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01242 44 918 Eukaryotic Initiation Factors Gene Family AT5G43810 35.855 1.61e-169 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01242 K11593 - gmx:100820376 1734.15