Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01236 ATGAATCCAAAACTTGAAGAAATATCTACAAGACTAGAACATTTTGTGAAACAAAAAGATATTCTTGGTTTTCAAAGTGTTTCTAGGAGAGTTTCTTGTAGAACAGCTACAGATTCATTGATTGAACCTATTGTTGTTGCAAGAGATGATGACAAAGAAAAGCTACTGAACATGCTTCTATCTGATGACCATGAAAAGAAGAACAATATAGAAGTAATTACAATATTGCCCATGGGAGGAATGGGAAAAACAACCCTTGCTCAATCCCTTTATAATGACAGTGAAGTGCAGGAACATTTTGATTTGAAAGTTTGGGCATGGGTGAATAGGTTAAGAGAGAAGAAATTTTTGCTTGTGCTTGATGACCTTTGGAATAACAAGTATAATGATTGGCATCACCTAATAGCTCCTTTCAGCGGCGGGAAGAAAGGAAGTAAGATCATTGTGACAACCCGACAACAAAGAGTTGCACAGATCACACATACTTTTCCCATTTGTGAGTTGAAGCCTCTTACAGATGATAATTGTTGGCACATACTAGCCAATCATGCATTTGGAAATGAAGGTTACGACAAATATCCTAGCCTCGAAGAAATTGGTAGGAAAATTGCAAGAAAATGCAATGGCCTACCACTAGCTGCTAAAACATTGGGAGGCCTTTTGCGATCAATTGTTGATCTTGGTGACTGGAAAAGAATTCTGAACAGCAGCTTATGGGCACATGATGATGTTTTACCCGCTCTACGCATAAGTTATCAACATCTTCCAGCACATATGAGAAGATGTTTTGCTTACTGCTCAATTTTTCCAAGACAACATTTTTTGAATAAGAAGGAATTGATTTTGTTATGGATGGCTGAAGGCTTTCTTCAACAGGTCCACAGTGAGAAAGCAATGGAATCAGCAGGTGATGATTGCTTTAATGAATTCTTATCTAGATCCTCAATTGACAAAGAGAAAGCTGAAGTTGGAGAAAAGTTTCGAATGCATGACCTCATTTATGATTTAGCAAAACTAGTATCCGGAAAAAGTTCATGCTACTTTGAATCTGGTGGTAAGTTCCCGGGAAGTGTTCGCCATCTAACATTTATTGCAAGGAAGTTTGATGTAACTAGGAGATTTGAGGGCTTGTATGAGCTAAATTGTTTGCGGACCTTTCTACCACGATTCCGATATCCAACTCAATGTTACTTAGCAAAAATAGTATCATGTGATTGGTTGCCAAAACTAAGATGCTTGCGAACATTCTCATTGTCTAATTACAAAAATATCACTGAGCTGCCCGATCCAATTGGTAATCTGGTGCTTCTAAGGTATCTAGACCTTTCCAATACTTGCATCAAAATGTTGCCTAATGCAACCTTTGTGCTTTACAATCTGCAGACTTTGAAATTATCCAATTGTAAATTTCTAATTCAGCTGCCAGAACAATTAGGAAATTTGATCAATTTACGTCACTTGGATATCAGTGGCACAAATTTGGAGTTGCCGACACAAATATGCAATCTACAAAGTCTCTGTACATTGACTTCTTTTGTAGTAGGCAAACAAAATGGACTAAGCATCACGGAATTAGGAAGATTTCCCCATTTGCAGGGTAAGCTTTCCATTTTGGAACTACAAAATGTTGACCATCCCATGGAGGCATTTCAAGCCGACCTAAAGAAAAAAGAGCAGATTGAGGAGCTTACGTTAGAATGGGGTAGTGATTCACAAGATTCACAAATGGCCAAAGATGTACTTGACAATCTGCAACCGTCAACAAATTTGAAGGAACTCAACATCAGATCCTATGGCGGCACAAGCTTTCCAAAATGGCTGGGTGATTCTTCATATTCTAATGTTATAGTCATTGGTATTACTGATTGCAACTATTGCTTGTCACTTCAACCATTTGGACAATTACCTTCTCTTAAGGAGCTTGCCATCAAAAGGATGAAAATGGTAAATACAATTGGCAATGAATTCTACTGCACCAATATAGGTTTGCCTTCTTTTCATCCATTTCCGTTGTTAGAGAGTCTCCAATTCGAAGACATGCCAGAGTGGGAGGAGTGGTTACCATTTGAAGGTGAAGGTAGCAACTTTTTTTTTCCTTGTCTTAAGAGTTTGACATTATCCAAGTGCCCTAATTTGAGAGGAAACTTGCCCAGCTCTCTACCTTCATTAACAAAGATTAGTATCTTAGAGTGCAACCTGCTACAAGCAAAATCATGTGATCTGCAATGGAAATCATCAGTTGAAGAAATACATATTAGAGAAGGGGGAGAAGACCTGTTGTCTTTGCTTGACAAATATTCTTGGTTGGAACTATCAATTGAAAATTGTGGCAGCTTTCAATCTTTGCCAAGAATGATACTCGGTGCCAATTGTCTTCAAAGGTTGACTCTTCTAAATATCCCTTCTTTGATTTCTTTCCCAACACATGGTTTGTCCACGTCATTGCAATCGCTTAAAAGCATGGACTGTGGGAACTTAGAATTTCTATCTCATGAAACATGGCACAAATACACATCACTTGAAAACCTGCGAATTTGGAATAGCTGTCATTCCATGAAATCCTTTCAATGGGATTGTTTCCCATCCCTTCCCTGGATTGATATATGGAATTGTCCCAACTTGGAAGCAATTACTACTCAAGGTGGATGGGTTGCTCTCAAATTATCAAATTTTTTTACCTGGGAATGTGAGAAACTTTCGTCACTGCCAGAACAGATTGTTCTCCCTGTCCTTAAAATCTGCTGCCTTACAAGGCTTCCGCAGCTATTATCGATTCCCCCAAGTTGTTTGCCTTCCAGTTTAGAATCACTTCATCTTGATATTGGAATTTTATCATCAATGTCTAAATATGAGTTAGGAGCGGTTACTGCCCACTTCTCTCCAGGATATGAGCTGTCCGATTTTGATGGTTTAAAGTTGTTGGAAGGAAAAGGGCTTCAGCATCTCACTTCTCTCCGAGAGCTTCACATCTGGAATTGTGGAAGCCTTGAGTCCTTGCCAGAAGCTCAATTGCCACCCTCTCTAGAATTACTGGAGATTTGTTTCTGTCCTTTACTAGAAGCAAGGTATCAAAGTCAGAAAGGGAAATATTGGTCTAAGATTGCTCACATTCCGGCAATCCAGATAAATGATGAAACGACTTCATCGAAGAGGCCGGGGCCACTGAAGCTGGAGAAGTATGATGTTGCTGTGAAGATCAAGATCGTCAAGGAAGTGAGGGCTTTCACTGACTTGGGGCTGAAGGAAGCGAAGGACTTGGTGGAGAAGGCTCCCTGTGTTTTGAAGAAGGGACTCACTAAGGAGGAGGCTAAGCCCATCATGGAGAAGCTTAAGAAGTTGGGTGCTGCTGTTGTGTTGGATTGA 3363 0.3955 MNPKLEEISTRLEHFVKQKDILGFQSVSRRVSCRTATDSLIEPIVVARDDDKEKLLNMLLSDDHEKKNNIEVITILPMGGMGKTTLAQSLYNDSEVQEHFDLKVWAWVNRLREKKFLLVLDDLWNNKYNDWHHLIAPFSGGKKGSKIIVTTRQQRVAQITHTFPICELKPLTDDNCWHILANHAFGNEGYDKYPSLEEIGRKIARKCNGLPLAAKTLGGLLRSIVDLGDWKRILNSSLWAHDDVLPALRISYQHLPAHMRRCFAYCSIFPRQHFLNKKELILLWMAEGFLQQVHSEKAMESAGDDCFNEFLSRSSIDKEKAEVGEKFRMHDLIYDLAKLVSGKSSCYFESGGKFPGSVRHLTFIARKFDVTRRFEGLYELNCLRTFLPRFRYPTQCYLAKIVSCDWLPKLRCLRTFSLSNYKNITELPDPIGNLVLLRYLDLSNTCIKMLPNATFVLYNLQTLKLSNCKFLIQLPEQLGNLINLRHLDISGTNLELPTQICNLQSLCTLTSFVVGKQNGLSITELGRFPHLQGKLSILELQNVDHPMEAFQADLKKKEQIEELTLEWGSDSQDSQMAKDVLDNLQPSTNLKELNIRSYGGTSFPKWLGDSSYSNVIVIGITDCNYCLSLQPFGQLPSLKELAIKRMKMVNTIGNEFYCTNIGLPSFHPFPLLESLQFEDMPEWEEWLPFEGEGSNFFFPCLKSLTLSKCPNLRGNLPSSLPSLTKISILECNLLQAKSCDLQWKSSVEEIHIREGGEDLLSLLDKYSWLELSIENCGSFQSLPRMILGANCLQRLTLLNIPSLISFPTHGLSTSLQSLKSMDCGNLEFLSHETWHKYTSLENLRIWNSCHSMKSFQWDCFPSLPWIDIWNCPNLEAITTQGGWVALKLSNFFTWECEKLSSLPEQIVLPVLKICCLTRLPQLLSIPPSCLPSSLESLHLDIGILSSMSKYELGAVTAHFSPGYELSDFDGLKLLEGKGLQHLTSLRELHIWNCGSLESLPEAQLPPSLELLEICFCPLLEARYQSQKGKYWSKIAHIPAIQINDETTSSKRPGPLKLEKYDVAVKIKIVKEVRAFTDLGLKEAKDLVEKAPCVLKKGLTKEEAKPIMEKLKKLGAAVVLD 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01236 1120 CDD Ribosomal_L7_L12 1055 1119 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cca08g01236 1120 PANTHER - 5 760 - -
Cca08g01236 1120 PANTHER DISEASE RESISTANCE PROTEIN RP 5 760 IPR044974 GO:0006952
Cca08g01236 1120 Gene3D - 1054 1119 IPR014719 -
Cca08g01236 1120 SUPERFAMILY L domain-like 328 752 - -
Cca08g01236 1120 SUPERFAMILY L domain-like 770 1019 - -
Cca08g01236 1120 Gene3D - 246 339 IPR036388 -
Cca08g01236 1120 SUPERFAMILY ClpS-like 1055 1119 IPR014719 -
Cca08g01236 1120 Pfam NB-ARC domain 109 235 IPR002182 GO:0043531
Cca08g01236 1120 Pfam NB-ARC domain 49 108 IPR002182 GO:0043531
Cca08g01236 1120 Gene3D - 35 108 IPR027417 -
Cca08g01236 1120 Gene3D - 109 163 IPR027417 -
Cca08g01236 1120 PRINTS Disease resistance protein signature 72 87 - -
Cca08g01236 1120 PRINTS Disease resistance protein signature 207 221 - -
Cca08g01236 1120 PRINTS Disease resistance protein signature 455 471 - -
Cca08g01236 1120 Pfam Ribosomal protein L7/L12 C-terminal domain 1056 1119 IPR013823 GO:0003735|GO:0006412
Cca08g01236 1120 Gene3D Ribonuclease Inhibitor 691 888 IPR032675 -
Cca08g01236 1120 Gene3D Ribonuclease Inhibitor 889 1042 IPR032675 -
Cca08g01236 1120 Gene3D Ribonuclease Inhibitor 381 690 IPR032675 -
Cca08g01236 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 266 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01236 Cca-Chr8 36395261 36399072 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01236 424 523 WRKY Transcription Factor Family AT4G12020 41.176 5.91e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01236 - - gmx:100803330 1406.73