Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01234 ATGGCATTAGCTATGGTGGGAGAGGCACTTATCTCTGCTTCTGTGCAGATCTTATTGGATAGGATGGCCTCCAGAGAGTTCAGAGATTTCTTTTCCAGCACAAAGCTAAATGTTTCTGTGTTGGATGGATTGAAGATAAACTTGTTGGCTCTTAACACTGTGCTCAATGATGCTGAGGAGAAGCAGATCACTGATCCTGCAGTGAAAGCATGGCTTGATGAGTTGAAAGATGCTGTCTATGATGCTGAAGATTTGTTGGATGAAATCAACACTGAGTCTTTCAGATGCAAGGTGGAGGGAGAATATAAAACATTTGCTACCGAGGTTAGATCATTTCTTTCATCTCCCTTTAACCAATTCCATAGGAGCATGAATCCGAAACTTGAAGAAATATCTACAAGACTAGAACATTTTGTGAAACAAAAAGATATTCTTGGTTTGCGAATTGTTTCTAGGAGAGTTTCTAGTAGAACAGCTACAGATTCATTGGTTGAACCTATTGTTGTTGCAAGAGATGATGACAAAGAAAAGCTACTGAACATGCTTCTATCTGATGACGATGAAAAGAAGAACAATATAGAAGTAATTACAATATTGGCCATGGGAGGAATGGGAAAAACAACCCTTGCTCAATCCCTTTATAATGATAGTGAAGTGCAGGAACATTTTGATTTGAAAGTTTGGGCATGGGTATCAGACGATTTTGATGTTTTTAGAGTGACAAAAAAAATTGTCGAATCTCTCACATTGAAAGATAGTCATATTACTAATTTGGATGTTCTTCGTGTGCAATTAAGGAATAGCTTAAGAGAGAAGAAATTTTTGCTTGTGCTTGATGACCTTTGGAATGACAAGTATAATGATTGGCATCACCTAATAGCTCCTTTCAGCAGCGGGAAGAAAGGAAGTAAGATCATTGTCACAACCCGACAACAAAGAGTTGCACAGGTCACACACACTTTTCCCATTTGTGAGTTGAAACCTCTTACAGATGATAATTGTTGGCACATACTAGCCAATCATGCATTTGGAAATGAAGGTTACTACAAATATCCTGGTCTCGAAGAAATTGGTAGGAAAATTGCAAAAAAATGCAATGGCCTACCACTAGCTGCTAAAACATTGGGAGGCCTTTTGCGATCGAATGTTGATCTTGGGGAATGGGAAAGAATTCTGAACAACAGCTTATGGGCACATGATGATGTTTTACCTGCTCTACGCATAAGTTATCTACATCTTCCAGCATATATGAAAAGATGTTTTGCTTACTGCTCAATTTTTCCAAGACAACATTTGTTGGATAAGAAGGAGTTGATTTTGTTATGGATGGCTGAAGGCTTTCTTCAACAGGTCCACAGTGAGAAAGCTATGGAATCAGCAGGTGATGATTGCTTCAATGAATTCTTATCTAGATCCTTAATTGACAAACAAAAAGTTGAAGTTGGAGGAAAGTTTCGAATGCATGACCTCATTTATGATTTAGCTAAACTAGTATCTGGAAAAAGTTCATGCTACTTTGAATGTGGTAAGTTATCGGGAAGTGTTCGCCATTTAATATTTCATACAAGGAAGTTTGATGTATCTAGGAGATTTGAGGGCTTGTATGAGCTAAACTGTTTGCGGACCTTTCTACCACGACTCCAATATTCAAGTCAAGAATGTTACTTAGCAAAAATAGTATCATGTGATTGGTTGCCAAAACTAAGATGCTTGCGAACACTCTCATTGTCTGAATACAAAAATATCACTGAACTGCCCGATTCAATTGGTAATCTGGTGCTTCTAAGGTATCTTGACCTTTCCAATACTTGGATCCAAATGTTGCCTAATTCAACCTTTGTGCTTTACAATCTGCAGACTTTGAAATTATCCAATTGTAAGTTTCTAATTCAACTGCCAGAACAATTAGGAAATTTGGTCAATTTACGTTACTTGGATATCAGTGACACAAATTTGGAGTTGCCGACAAAAATATGCAATCTACAAAGTCTCCGTACATTGACTTGTTTTGTAGTAGGCAAACAAAATGGACTAAGCATCACGGAATTAAGAAGATTTCCCCATTTGCAGGGTAAGCTTTCCATTTTGGAACTACAAAATGTTGACCATCCTATGGAGGCATTTCAAGCCGACCTGAAGAAAAAAGGGCAAATTGAGGAGCTTACGTTGAAATGGGGTAGTGATCCACAAGGTTCGGAAATTGCCAAAGATGTACTTGACAATCTGCAACCGTCAACAAATTTAAAGAAACTCAACATCAGCTCCTATGGCGGCACAAGCTTTCCAAAATGGTTGGGTGATTCTTCATATTCTAATGTTATAGTCCTTGGTATTACTGATTGCAAGTATTGCTTGTCACTTCCACCATTTGGACAATTACCTTCACTTAAGGAACTTGTCATCAAAAGAATGAAAATGATAAGTACAATTGGCAATGAATTCTACTGCAGCAATATAGGTTTGCCTTCTTTTAAGCCATTTCCATTGTTAGAGAGTCTCCAATTCGAAGACATGCCACACTGGGAGGAGTGGTTACCATTTGAAGGTGAAGGTAGCAACTTTTGTTTTCCTTGTCTTAAGAATTTGAAATTATCCAAGTGCCCTAATTTGAGAGGAAACTTGCCCAACTCTCTGCCTTCATTAACAAAGATTAGTATCTCAGAGTGCAAGATGCTACAAGCAAAAGCATGTGATCTGCAATGGAACTCATCAGTTGAAGAAATACATATTACAGAAGGGGGAGAAGATCTGTTGTCTTTGCTTGACAAATATTCTTGGTTAAAACTATCTATTGAAAATTGTCACAGCTTTCAATCTTTGCCAAGAATGATGCTCGTTGCCAATTGTCTTCGAAGGTTGACTCTTAAAAATATCCCTTCTTTGATTTCTTTCCCAACACATGGTTTGTCCACGTCATTGCAATTACTTGAAATCAAAGACTGTGGGAACTTAGAATTTCTATCTCATGAAACATGGCACAAATACACATCACTTGAAAACCTGATAATTTGGAATAGCTGTCATTCCATGAAATCCTTTCCATTGGATTGTTTCCCATCCCTTCAATTTATTGATATATGGTATTGTCACAACTTGGAAGCAATTACTACTCAAGGTGGATCGGTTGCTCTCAAATTATCATTTCTTATTATCAGGGAATGTGTGAAGCTTTCGTCACTGCCAGAACAGATTGTTCTCCCTGTCTGTAATCACTTCCACCTTACAAGGCTTCCGCAGCTATTATCGATTTCCCCAAGTTGTTTGTCTTCCAGTTTAAAATCACTTGTTGTTGATATTGGAAATTTATCATCAATGTCTAAACATGAGTTAGGTTCACTATTCCAATGCCTCACTTCTCTGTCAATTCTTCACCTTTGGGGTTTGCGGCGGCAAGATCTGCTCAATACCTTGTTGAAGGAGCGGTTACTGCCCACTTCTCTCCAGCATCTGACGCTTTCGCGTTTTGATGGTTTAAAGTTGTTGGAAGGAAAAGGGCTTCAACATCTCACTTCTCTCCGAGAGCTTCACATCTTGCAATGTCAAAACCTTGAGTCCTTGCCAGAAGATCAATTGTCACCCTCTCTAGAATTACTGGAGATTTGTTTCTGTCCTTTACTAGAAGCAAGGTATCAAAGTCAGAGAGGGAAATATTGTTCTACGATTGCTCACATTCCGGCTATCAAGATAAATGGTGAAGTGATAATATAA 3708 0.3824 MALAMVGEALISASVQILLDRMASREFRDFFSSTKLNVSVLDGLKINLLALNTVLNDAEEKQITDPAVKAWLDELKDAVYDAEDLLDEINTESFRCKVEGEYKTFATEVRSFLSSPFNQFHRSMNPKLEEISTRLEHFVKQKDILGLRIVSRRVSSRTATDSLVEPIVVARDDDKEKLLNMLLSDDDEKKNNIEVITILAMGGMGKTTLAQSLYNDSEVQEHFDLKVWAWVSDDFDVFRVTKKIVESLTLKDSHITNLDVLRVQLRNSLREKKFLLVLDDLWNDKYNDWHHLIAPFSSGKKGSKIIVTTRQQRVAQVTHTFPICELKPLTDDNCWHILANHAFGNEGYYKYPGLEEIGRKIAKKCNGLPLAAKTLGGLLRSNVDLGEWERILNNSLWAHDDVLPALRISYLHLPAYMKRCFAYCSIFPRQHLLDKKELILLWMAEGFLQQVHSEKAMESAGDDCFNEFLSRSLIDKQKVEVGGKFRMHDLIYDLAKLVSGKSSCYFECGKLSGSVRHLIFHTRKFDVSRRFEGLYELNCLRTFLPRLQYSSQECYLAKIVSCDWLPKLRCLRTLSLSEYKNITELPDSIGNLVLLRYLDLSNTWIQMLPNSTFVLYNLQTLKLSNCKFLIQLPEQLGNLVNLRYLDISDTNLELPTKICNLQSLRTLTCFVVGKQNGLSITELRRFPHLQGKLSILELQNVDHPMEAFQADLKKKGQIEELTLKWGSDPQGSEIAKDVLDNLQPSTNLKKLNISSYGGTSFPKWLGDSSYSNVIVLGITDCKYCLSLPPFGQLPSLKELVIKRMKMISTIGNEFYCSNIGLPSFKPFPLLESLQFEDMPHWEEWLPFEGEGSNFCFPCLKNLKLSKCPNLRGNLPNSLPSLTKISISECKMLQAKACDLQWNSSVEEIHITEGGEDLLSLLDKYSWLKLSIENCHSFQSLPRMMLVANCLRRLTLKNIPSLISFPTHGLSTSLQLLEIKDCGNLEFLSHETWHKYTSLENLIIWNSCHSMKSFPLDCFPSLQFIDIWYCHNLEAITTQGGSVALKLSFLIIRECVKLSSLPEQIVLPVCNHFHLTRLPQLLSISPSCLSSSLKSLVVDIGNLSSMSKHELGSLFQCLTSLSILHLWGLRRQDLLNTLLKERLLPTSLQHLTLSRFDGLKLLEGKGLQHLTSLRELHILQCQNLESLPEDQLSPSLELLEICFCPLLEARYQSQRGKYCSTIAHIPAIKINGEVII 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01234 1235 Coils Coil 41 61 - -
Cca08g01234 1235 Gene3D Ribonuclease Inhibitor 1066 1216 IPR032675 -
Cca08g01234 1235 Gene3D Ribonuclease Inhibitor 929 1065 IPR032675 -
Cca08g01234 1235 Gene3D - 153 321 IPR027417 -
Cca08g01234 1235 SUPERFAMILY L domain-like 928 1207 - -
Cca08g01234 1235 SUPERFAMILY L domain-like 486 910 - -
Cca08g01234 1235 Coils Coil 72 92 - -
Cca08g01234 1235 Pfam NB-ARC domain 172 394 IPR002182 GO:0043531
Cca08g01234 1235 PANTHER DISEASE RESISTANCE PROTEIN RP 55 915 IPR044974 GO:0006952
Cca08g01234 1235 Gene3D Ribonuclease Inhibitor 542 912 IPR032675 -
Cca08g01234 1235 PANTHER - 55 915 - -
Cca08g01234 1235 Gene3D - 37 134 - -
Cca08g01234 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 424 IPR027417 -
Cca08g01234 1235 Gene3D - 328 408 IPR042197 -
Cca08g01234 1235 CDD RX-CC_like 13 135 IPR038005 -
Cca08g01234 1235 PRINTS Disease resistance protein signature 195 210 - -
Cca08g01234 1235 PRINTS Disease resistance protein signature 268 282 - -
Cca08g01234 1235 PRINTS Disease resistance protein signature 365 379 - -
Cca08g01234 1235 PRINTS Disease resistance protein signature 613 629 - -
Cca08g01234 1235 Gene3D - 409 497 IPR036388 -
Cca08g01234 1235 Pfam Rx N-terminal domain 11 105 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01234 Cca-Chr8 36364805 36369080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01234 582 681 WRKY Transcription Factor Family AT4G12020 42.157 3.28e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01234 - - gmx:100803330 1711.04