Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01228 ATGGATGTTCAAGTGATAAACGTGGAAGGAGGTGGTCATCAAACCAAGGCAGATGATGGGGATGCAGAACCAAGTGATGGTGAAGTTAATAATGCTGAAAACTATGGATCTCAGGCTGAGGATGGGATttctgagccatacttgggtatggaatttgactctgtagatgttgctaagactttatataatgagtatgccagacatatgggttttagcTCTAAAGTTGGCCCATATGGTCGCTCTAAAGCTGATGGGGACAGTATGTATCGGGAGTTTGTGTGTGGAAGGGAAGGTTTGAAAAAAAGGCCAAATGAAAgttgcaatgcaatgattaggatcgagttaaaaagtccaaataaatgggtcgtaacaaaatttgtgaaggagcatagtcattccatggtgagttccagtaaggcgcaCAATAATCGCCCAAGTAAGCATTTTTCTAGTGTCGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCCAGTGGTGTCATGTATGTATCCATGGATGGGAATCGTGTTTCAAATCAGAATAGTCATGGGATGAGGAATATTCATGCTGCTGCTTCTGAACGCAGTCACCCAGTTAAAAATTCCACATCGATGAATTATGCTGTTAGGCCTTATTTTCAAAACAGGACATTGGGGAAGgatgctcataatctgctggagtattttaagaagatgcaagctgagaaccctggtttcttctatgctatacaacttgatgaagacaatcgtatgtctaatgtcttttgggcagatgcaagatcaaggactgcatacagttattatggtgacacagttcatctggacacagcatacaaagtaaaccaatatagagtcccatttgctccttttaccggggtaaaccatcatggtcaaatggttttgtttggttgtgcactccttttggatgattctgaggcatcttttttatggctcttgaagacatttctgacagcaatgaatgatcgtcaacctgtctctataactactgatcaagacagagccatgcagacagcagtttctcaagttttcccacaagctcgccactgtattagcaagtggcatatcttgagagaaggccaagagaagttggcccatgtatgtcttgcgcatccaaattttcaagttgaactttataattgtattaacttgacagaaaccattgaggagtttgaatcatcttggaatattatccttgataaatatgaacttagaagaaacgattggcttcagtcattgtataatgctcgtgctcaatgggttcccgcatacttccgtgattcattttttgcagcaatatctcctactcaaggatttgatggttctttttttgatggttatgtcaaccaacaaacaacattgccattgttcttcaggcagtatgaaagagctttagagagctggattgaaaatgaaatggaagcagattttgagacagttagcacaacagcagttttgaagacgccttcaccaatggagaaacaggctgctgatctttatacgagaaaaatatttgcaaagtttcaagaagagcttgttgaaacttttgtttatactgcaaatagaattgaaggagatgggccaaatagcacattcagagttgctaaatttgaggatgaccaaaaggcatatatggtcacattaaaccattctgagttgaaagctaactgtagttgccaaatgtttgagtattcaggcattctttgcaggcatgttttaactgttttcaccgtgacaaatgtacttaccttaccaccccattacatcttaaaacgatggacaaggaatgcaaaaagcagtgcaggatcagatgaacataccagtgaatcacatgcacaggagtctttgacagcaaggtacagcaatctatgtaaggaagctatcagatatgctgaggaaggagctgtaactgtggaaacttataatgctgcaataagtggtcttagagaaggtggaaagaaggttgctactgtgaaaagaagtgttgctaaagtgacacttcCTAATAGTCAGGTCAGTAGTTCTGCTTATGATGACAGGAAAATTCCTACTCCGACTTTGGATACAACAACTCCTCTTTTATGGCCGCGACAAGATGAAATAACAAGGCGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCTCGGATGGCCCCAGTCTCTCTTCATCGTGATGATGGTCAATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAGAACACAACTCCTGGGAATAAAGTAGCCGTTATCAATCTGAAGTTGCAAGATTATACCAAGGCTCCATCCACAGAATCTGAGGTTAAGTTTCATCTCTCCAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGCGAACAGCTGTCAACGCCAGCAAATAAGGTTGCTGTAATAAATCTCAAGCTTCAAGATACTGAGACAACCTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTAAGATCAATGGCTTATATCCGTGAGCAGCTTTCTCATGCTGACGATGCACAGGTAGAACCTGTATCGAAAAAGCATAGGAAGTAA 2649 0.1767 MDVQVINVEGGGHQTKADDGDAEPSDGEVNNAENYGSQAEDGISEPYLGMEFDSVDVAKTLYNEYARHMGFSSKVGPYGRSKADGDSMYREFVCGREGLKKRPNESCNAMIRIELKSPNKWVVTKFVKEHSHSMVSSSKAHNNRPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNSHGMRNIHAAASERSHPVKNSTSMNYAVRPYFQNRTLGKDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTAYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASFLWLLKTFLTAMNDRQPVSITTDQDRAMQTAVSQVFPQARHCISKWHILREGQEKLAHVCLAHPNFQVELYNCINLTETIEEFESSWNIILDKYELRRNDWLQSLYNARAQWVPAYFRDSFFAAISPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIENEMEADFETVSTTAVLKTPSPMEKQAADLYTRKIFAKFQEELVETFVYTANRIEGDGPNSTFRVAKFEDDQKAYMVTLNHSELKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPPHYILKRWTRNAKSSAGSDEHTSESHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGLREGGKKVATVKRSVAKVTLPNSQVSSSAYDDRKIPTPTLDTTTPLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGQSENMVVLPCLKSMTWVMENKNTTPGNKVAVINLKLQDYTKAPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQVEPVSKKHRK 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01228 882 MobiDBLite consensus disorder prediction 1 40 - -
Cca08g01228 882 SMART 26again6 564 591 IPR006564 GO:0008270
Cca08g01228 882 Pfam SWIM zinc finger 559 587 IPR007527 GO:0008270
Cca08g01228 882 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Cca08g01228 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 33 810 - -
Cca08g01228 882 Pfam MULE transposase domain 275 367 IPR018289 -
Cca08g01228 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 810 IPR031052 GO:0006355
Cca08g01228 882 Pfam FAR1 DNA-binding domain 61 135 IPR004330 -
Cca08g01228 882 MobiDBLite consensus disorder prediction 133 154 - -
Cca08g01228 882 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01228 Cca-Chr8 36118684 36135482 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g01228 MULE 5.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01228 - - gmx:100786516 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01228 08 36118684 36135482 Cca08g01228 08 36118684 36135482 ECH